MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-143

Family name MIR-143 (all species)
Seed GAGAUGA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-143
Paralogues
Orthologues Aca-Mir-143  Ami-Mir-143  Bta-Mir-143  Cfa-Mir-143  Cja-Mir-143  Cli-Mir-143  Cmi-Mir-143  Cpi-Mir-143  Cpo-Mir-143  Dno-Mir-143  Dre-Mir-143  Ebu-Mir-143  Eca-Mir-143  Ete-Mir-143  Gga-Mir-143  Gja-Mir-143  Hsa-Mir-143  Laf-Mir-143  Lch-Mir-143  Loc-Mir-143  Mal-Mir-143  Mdo-Mir-143  Mml-Mir-143  Mmr-Mir-143  Mmu-Mir-143  Mun-Mir-143  Neu-Mir-143  Oan-Mir-143  Ocu-Mir-143  Pab-Mir-143  Pbv-Mir-143  Pma-Mir-143  Rno-Mir-143  Sha-Mir-143  Spt-Mir-143  Sto-Mir-143  Tgu-Mir-143  Xla-Mir-143-P1  Xla-Mir-143-P2  Xtr-Mir-143 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 scaffold06411: 3417-3471 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-143)		 Mir-145 scaffold06411: 3160-3221 [-] UCSC Ensembl
Mir-143 scaffold06411: 3417-3471 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAUACCCCAGGUCCAUACCUCUGGCCCAUGGUGCAGUGCUGCAUCUCUGGUCAGCUGGUAGUCUGAGAUGAAGCACUGUAGCUCGGGACAGAGGACUGAGCCAGCUGCCUGCUG
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Structure
        10          20        30         40        50       
CCAUACCCCAGGUCCAUA--|     G   AU  -         G      UGGUCAGC 
                    CCUCUG CCC  GG UGCAGUGCU CAUCUC        \
                    GGAGAC GGG  UC AUGUCACGA GUAGAG        U
GUCGUCCGUCGACCGAGUCA^     A   C-  G         A      UCUGAUGG 
   110       100        90         80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-143_5p*
mirBase accessionMIMAT0044336
Sequence 
0- GGUGCAGUGCUGCAUCUCUGGUC -23
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Mature sequence

Gmo-Mir-143_3p
mirBase accessionMIMAT0044337
Sequence 
34- UGAGAUGAAGCACUGUAGCUC -55
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