MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-143

Family name MIR-143 (all species)
Seed GAGAUGA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-143
Paralogues
Orthologues Aca-Mir-143  Ami-Mir-143  Bta-Mir-143  Cfa-Mir-143  Cja-Mir-143  Cli-Mir-143  Cmi-Mir-143  Cpi-Mir-143  Cpo-Mir-143  Dno-Mir-143  Ebu-Mir-143  Eca-Mir-143  Ete-Mir-143  Gga-Mir-143  Gja-Mir-143  Gmo-Mir-143  Hsa-Mir-143  Laf-Mir-143  Lch-Mir-143  Loc-Mir-143  Mal-Mir-143  Mdo-Mir-143  Mml-Mir-143  Mmr-Mir-143  Mmu-Mir-143  Mun-Mir-143  Neu-Mir-143  Oan-Mir-143  Ocu-Mir-143  Pab-Mir-143  Pbv-Mir-143  Pma-Mir-143  Rno-Mir-143  Sha-Mir-143  Spt-Mir-143  Sto-Mir-143  Tgu-Mir-143  Xla-Mir-143-P1  Xla-Mir-143-P2  Xtr-Mir-143 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr14: 38742335-38742389 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-143)		 Mir-143 chr14: 38742335-38742389 [+] UCSC Ensembl
Mir-145 chr14: 38743970-38744030 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCGGCCCGAUCUACAGUCGUCUGGCCCGCGGUGCAGUGCUGCAUCUCUGGUCAACUGGGAGUCUGAGAUGAAGCACUGUAGCUCGGGAGGACAACACUGUCAGCUCAUACAAAC
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Structure
        10           20        30         40        50       
UCCGGCCCGAUCUACAGUC---|   GG    C  -         G      UGGUCAAC 
                      GUCU  CCCG GG UGCAGUGCU CAUCUC        \
                      CAGG  GGGC UC AUGUCACGA GUAGAG        U
CAAACAUACUCGACUGUCACAA^   A-    -  G         A      UCUGAGGG 
   110       100        90          80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-143_5p*
mirBase accessionNone
Sequence 
0- GGUGCAGUGCUGCAUCUCUGG -21
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Mature sequence

Dre-Mir-143_3p
mirBase accessionMIMAT0001840
Sequence 
34- UGAGAUGAAGCACUGUAGCUC -55
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Proposed targets TargetScanFish: dre-miR-143