MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-145

Family name MIR-145 (all species)
Seed UCCAGUU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-145
Paralogues
Orthologues Aca-Mir-145  Ami-Mir-145  Bta-Mir-145  Cfa-Mir-145  Cja-Mir-145  Cli-Mir-145  Cmi-Mir-145  Cpi-Mir-145  Cpo-Mir-145  Dno-Mir-145  Ebu-Mir-145  Eca-Mir-145  Ete-Mir-145  Gga-Mir-145  Gja-Mir-145  Gmo-Mir-145  Hsa-Mir-145  Laf-Mir-145  Lch-Mir-145  Loc-Mir-145  Mal-Mir-145  Mdo-Mir-145  Mml-Mir-145  Mmr-Mir-145  Mmu-Mir-145  Mun-Mir-145  Neu-Mir-145  Oan-Mir-145  Ocu-Mir-145  Pab-Mir-145  Pbv-Mir-145  Pma-Mir-145  Rno-Mir-145  Sha-Mir-145  Spt-Mir-145  Sto-Mir-145  Tgu-Mir-145  Xla-Mir-145-P1  Xla-Mir-145-P2  Xtr-Mir-145 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr14: 38743970-38744030 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-145)		 Mir-143 chr14: 38742335-38742389 [+] UCSC Ensembl
Mir-145 chr14: 38743970-38744030 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUCAGUCUUCAUCAUUUCCUCAUCCCCGGGGUCCAGUUUUCCCAGGAAUCCCUUGGGCAAUCGAAAGGGGGAUUCCUGGAAAUACUGUUCUUGGGGUUGGGGCUGGACUACUGAAUAUGAC
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Structure
        10          20        30        40        50        60
GUCAGUCUUCAUCAUUU--|    U        UC    U  C            UGGGCA 
                   CCUCA CCCCGGGG  CAGU UU CCAGGAAUCCCU      A
                   GGGGU GGGGUUCU  GUCA AA GGUCCUUAGGGG      U
CAGUAUAAGUCAUCAGGUC^    U        U-    U  A            GAAAGC 
 .       110       100        90         80        70
Deep sequencing
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CommentThere are Dicer cuts -1 and -2 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-145_5p
mirBase accessionMIMAT0001842
Sequence 
0- GUCCAGUUUUCCCAGGAAUCCCU -23
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Proposed targets TargetScanFish: dre-miR-145
Star sequence

Dre-Mir-145_3p*
mirBase accessionMIMAT0031976
Sequence 
39- GGAUUCCUGGAAAUACUGUUCU -61
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