MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-145

Family name MIR-145 (all species)
Seed UCCAGUU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-145  Ami-Mir-145  Bta-Mir-145  Cfa-Mir-145  Cja-Mir-145  Cli-Mir-145  Cmi-Mir-145  Cpi-Mir-145  Cpo-Mir-145  Dno-Mir-145  Dre-Mir-145  Ebu-Mir-145  Eca-Mir-145  Ete-Mir-145  Gga-Mir-145  Gja-Mir-145  Gmo-Mir-145  Hsa-Mir-145  Laf-Mir-145  Lch-Mir-145  Mal-Mir-145  Mdo-Mir-145  Mml-Mir-145  Mmr-Mir-145  Mmu-Mir-145  Mun-Mir-145  Neu-Mir-145  Oan-Mir-145  Ocu-Mir-145  Pab-Mir-145  Pbv-Mir-145  Pma-Mir-145  Rno-Mir-145  Sha-Mir-145  Spt-Mir-145  Sto-Mir-145  Tgu-Mir-145  Xla-Mir-145-P1  Xla-Mir-145-P2  Xtr-Mir-145 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG6: 37297028-37297087 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCGGCAGCGGGCCGUCUCCCUGUCCUCGGGGUCCAGUUUUCCCAGGAAUCCCUUGGGCAUUCAGAGGGGGAUUCCUGGAAAUACUGUUCUUGGGGGCGGGGCUUGGCAGCACGGCACCAU
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Structure
        10          20        30        40        50          
UCGGCAGCGGGCCGUCU--|             UC    U  C            UGGGCA 
                   CCCUGUCCUCGGGG  CAGU UU CCAGGAAUCCCU      \
                   GGGGCGGGGGUUCU  GUCA AA GGUCCUUAGGGG      U
UACCACGGCACGACGGUUC^             U-    U  A            GAGACU 
.       110       100        90         80        70
Deep sequencing
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CommentThere are Dicer cuts -1 and -2 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-145_5p
mirBase accessionNone
Sequence 
0- GUCCAGUUUUCCCAGGAAUCCCU -23
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Star sequence

Loc-Mir-145_3p*
mirBase accessionNone
Sequence 
38- GGAUUCCUGGAAAUACUGUUCU -60
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