MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-145

Family name MIR-145 (all species)
Seed UCCAGUU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-145
Paralogues
Orthologues Aca-Mir-145  Ami-Mir-145  Bta-Mir-145  Cfa-Mir-145  Cja-Mir-145  Cli-Mir-145  Cmi-Mir-145  Cpi-Mir-145  Cpo-Mir-145  Dno-Mir-145  Dre-Mir-145  Ebu-Mir-145  Eca-Mir-145  Ete-Mir-145  Gga-Mir-145  Gja-Mir-145  Gmo-Mir-145  Hsa-Mir-145  Laf-Mir-145  Lch-Mir-145  Loc-Mir-145  Mal-Mir-145  Mdo-Mir-145  Mml-Mir-145  Mmr-Mir-145  Mmu-Mir-145  Mun-Mir-145  Neu-Mir-145  Oan-Mir-145  Ocu-Mir-145  Pab-Mir-145  Pbv-Mir-145  Rno-Mir-145  Sha-Mir-145  Spt-Mir-145  Sto-Mir-145  Tgu-Mir-145  Xla-Mir-145-P1  Xla-Mir-145-P2  Xtr-Mir-145 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046089.1: 6112208-6112266 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-145)		 Mir-143 NC_046089.1: 6110951-6111006 [+] UCSC Ensembl
Mir-145 NC_046089.1: 6112208-6112266 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAAAUCUCAGAAUUCCCUGCGUGGGCAUGGUCCAGUUUUCCCAGGAAUCCCUGUGCCCUUUUCCCGGGAUUCCAGGAAUAACUGUCCAAGCACACGUGGCGCAGCGUCCAGCAGAAGG
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Structure
        10          20        30         40        50         
GAAAAUCUCAGAAUUCC--|UG    G  A   UC     -    CA        UGUGCC 
                   C  CGUG GC UGG  CAGUU UUCC  GGAAUCCC      C
                   G  GCAC CG ACC  GUCAA AAGG  CCUUAGGG      U
GGAAGACGACCUGCGACGC^GU    A  A   U-     U    A-        CCCUUU 
       110       100        90         80         70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-145_5p
mirBase accessionMIMAT0019476
Sequence 
0- GUCCAGUUUUCCCAGGAAUCCCU -23
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Star sequence

Pma-Mir-145_3p* (predicted)
mirBase accessionMIMAT0019477
Sequence 
37- GGAUUCCAGGAAUAACUGUCCA -59
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