Mir-145-P2

MirGeneDB ID

Xla-Mir-145-P2

Family name

MIR-145 (all species)

Seed

UCCAGUU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-145

Paralogues

Xla-Mir-145-P1

Orthologues

Aca-Mir-145 Ami-Mir-145 Bta-Mir-145 Cfa-Mir-145 Cja-Mir-145 Cli-Mir-145 Cmi-Mir-145 Cpi-Mir-145 Cpo-Mir-145 Dno-Mir-145 Dre-Mir-145 Ebu-Mir-145 Eca-Mir-145 Ete-Mir-145 Gga-Mir-145 Gja-Mir-145 Gmo-Mir-145 Hsa-Mir-145 Laf-Mir-145 Lch-Mir-145 Loc-Mir-145 Mal-Mir-145 Mdo-Mir-145 Mml-Mir-145 Mmr-Mir-145 Mmu-Mir-145 Mun-Mir-145 Neu-Mir-145 Oan-Mir-145 Ocu-Mir-145 Pab-Mir-145 Pbv-Mir-145 Pma-Mir-145 Rno-Mir-145 Sha-Mir-145 Spt-Mir-145 Sto-Mir-145 Tgu-Mir-145 Xtr-Mir-145

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030729.1: 104696294-104696353 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CACAGAGUCAUUUGUGACCUAUUCCUCAAGGUCCAGUUUUCCCAGGAAUCCCUUGGGUGCUGUGGUGGGGAUUCCUGGAAAUACUGUUCUUGGGGUGUAGGCGUGGCAACUGGAAACCUC

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Structure

        10          20        30        40        50          
CACAGAGUCAUUUGUGA--|    U        UC    U  C            UGGGUG 
                   CCUAU CCUCAAGG  CAGU UU CCAGGAAUCCCU      \
                   GGAUG GGGGUUCU  GUCA AA GGUCCUUAGGGG      C
CUCCAAAGGUCAACGGUGC^    U        U-    U  A            UGGUGU 
.       110       100        90         80        70

Deep sequencing

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Comment

There are Dicer cuts -1 and -2 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Mature sequence

Xla-Mir-145-P2_5p

mirBase accession

MIMAT0046460

Sequence

0- GUCCAGUUUUCCCAGGAAUCCCU -23

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Star sequence

Xla-Mir-145-P2_3p*

mirBase accession

MIMAT0046461

Sequence

38- GGAUUCCUGGAAAUACUGUUCU -60

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