MirGeneDB 3.0
MirGeneDB ID

Mdo-Mir-145

Family name MIR-145 (all species)
Seed UCCAGUU
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-145
Paralogues
Orthologues Aca-Mir-145  Ami-Mir-145  Bta-Mir-145  Cfa-Mir-145  Cja-Mir-145  Cli-Mir-145  Cmi-Mir-145  Cpi-Mir-145  Cpo-Mir-145  Dno-Mir-145  Dre-Mir-145  Ebu-Mir-145  Eca-Mir-145  Ete-Mir-145  Gga-Mir-145  Gja-Mir-145  Gmo-Mir-145  Hsa-Mir-145  Laf-Mir-145  Lch-Mir-145  Loc-Mir-145  Mal-Mir-145  Mml-Mir-145  Mmr-Mir-145  Mmu-Mir-145  Mun-Mir-145  Neu-Mir-145  Oan-Mir-145  Ocu-Mir-145  Pab-Mir-145  Pbv-Mir-145  Pma-Mir-145  Rno-Mir-145  Sha-Mir-145  Spt-Mir-145  Sto-Mir-145  Tgu-Mir-145  Xla-Mir-145-P1  Xla-Mir-145-P2  Xtr-Mir-145 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)		 1: 377173849-377173908 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-145)		 Mir-145 1: 377173849-377173908 [-] UCSC Ensembl
Mir-143 1: 377176754-377176808 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGUCACACUCUCCCAACCUUGUCCUCAGGGUCCAGUUUUCCCAGGAAUCCCUUAGAUGCUAAGAUGGGGAUUCCUGGAAAUACUGUUCUUGAGGUCAUGGAUUUACAACUGGACUAUAU
Get precursor sequence
Structure
        10          20        30        40        50          
AGGUCACACUCUCCCAA--| U  U        UC    U  C            UAGAUG 
                   CC UG CCUCAGGG  CAGU UU CCAGGAAUCCCU      \
                   GG AC GGAGUUCU  GUCA AA GGUCCUUAGGGG      C
UAUAUCAGGUCAACAUUUA^ U  U        U-    U  A            UAGAAU 
.       110       100        90         80        70
Deep sequencing
Go to detailed chart
CommentThere are Dicer cuts -1 and -2 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-145_5p
mirBase accessionMIMAT0004116
Sequence 
0- GUCCAGUUUUCCCAGGAAUCCCU -23
Get sequence
Proposed targets TargetScanVert: mdo-miR-145-5p
Star sequence

Mdo-Mir-145_3p*
mirBase accessionMIMAT0026670
Sequence 
38- GGAUUCCUGGAAAUACUGUUCU -60
Get sequence
Proposed targets TargetScanVert: mdo-miR-145-3p