MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-145

Family name MIR-145 (all species)
Seed UCCAGUU
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues Aca-Mir-145  Ami-Mir-145  Bta-Mir-145  Cfa-Mir-145  Cja-Mir-145  Cli-Mir-145  Cmi-Mir-145  Cpi-Mir-145  Cpo-Mir-145  Dno-Mir-145  Dre-Mir-145  Ebu-Mir-145  Eca-Mir-145  Ete-Mir-145  Gga-Mir-145  Gja-Mir-145  Gmo-Mir-145  Hsa-Mir-145  Lch-Mir-145  Loc-Mir-145  Mal-Mir-145  Mdo-Mir-145  Mml-Mir-145  Mmr-Mir-145  Mmu-Mir-145  Mun-Mir-145  Neu-Mir-145  Oan-Mir-145  Ocu-Mir-145  Pab-Mir-145  Pbv-Mir-145  Pma-Mir-145  Rno-Mir-145  Sha-Mir-145  Spt-Mir-145  Sto-Mir-145  Tgu-Mir-145  Xla-Mir-145-P1  Xla-Mir-145-P2  Xtr-Mir-145 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010028.1: 68861012-68861071 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGGCCACUCCCUCCCACCUUGUCCUCACGGUCCAGUUUUCCCAGGAAUCCCUUAGAUGCUAAGAUGGGGAUUCCUGGAAAUACUGUUCUUGAGGUCAUGGUUUAACAGCUGGAUCCGGC
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Structure
        10          20        30        40        50          
AAGGCCACUCCCUCCCA--| U  U     C  UC    U  C            UAGAUG 
                   CC UG CCUCA GG  CAGU UU CCAGGAAUCCCU      \
                   GG AC GGAGU UC  GUCA AA GGUCCUUAGGGG      C
CGGCCUAGGUCGACAAUUU^ U  U     -  UU    U  A            UAGAAU 
.       110       100         90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -2 on both arms. Although there is a templated T at the 3' end of the 3p arm, this transcript is annotated as a Group 2 miRNA given the CAGE data in human and the 5' starting cut of 3' offset reads in various vertebrate taxa.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Wh
Mature sequence

Laf-Mir-145_5p
mirBase accessionNone
Sequence 
0- GUCCAGUUUUCCCAGGAAUCCCU -23
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Star sequence

Laf-Mir-145_3p*
mirBase accessionNone
Sequence 
38- GGAUUCCUGGAAAUACUGUUCU -60
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