| MirGeneDB ID | Laf-Mir-145 |
|---|---|
| Family name | MIR-145 (all species) |
| Seed | UCCAGUU |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-145 Ami-Mir-145 Bta-Mir-145 Cfa-Mir-145 Cja-Mir-145 Cli-Mir-145 Cmi-Mir-145 Cpi-Mir-145 Cpo-Mir-145 Dno-Mir-145 Dre-Mir-145 Ebu-Mir-145 Eca-Mir-145 Ete-Mir-145 Gga-Mir-145 Gja-Mir-145 Gmo-Mir-145 Hsa-Mir-145 Lch-Mir-145 Loc-Mir-145 Mal-Mir-145 Mdo-Mir-145 Mml-Mir-145 Mmr-Mir-145 Mmu-Mir-145 Mun-Mir-145 Neu-Mir-145 Oan-Mir-145 Ocu-Mir-145 Pab-Mir-145 Pbv-Mir-145 Pma-Mir-145 Rno-Mir-145 Sha-Mir-145 Spt-Mir-145 Sto-Mir-145 Tgu-Mir-145 Xla-Mir-145-P1 Xla-Mir-145-P2 Xtr-Mir-145 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010028.1: 68861012-68861071 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AAGGCCACUCCCUCCCACCUUGUCCUCACGGUCCAGUUUUCCCAGGAAUCCCUUAGAUGCUAAGAUGGGGAUUCCUGGAAAUACUGUUCUUGAGGUCAUGGUUUAACAGCUGGAUCCGGCGet precursor sequence |
| Structure | 10 20 30 40 50 AAGGCCACUCCCUCCCA--| U U C UC U C UAGAUG CC UG CCUCA GG CAGU UU CCAGGAAUCCCU \ GG AC GGAGU UC GUCA AA GGUCCUUAGGGG C CGGCCUAGGUCGACAAUUU^ U U - UU U A UAGAAU . 110 100 90 80 70 |
| Deep sequencing | |
| Comment | There is a second Dicer cut -2 on both arms. Although there is a templated T at the 3' end of the 3p arm, this transcript is annotated as a Group 2 miRNA given the CAGE data in human and the 5' starting cut of 3' offset reads in various vertebrate taxa. |
| 3' NTU | Yes |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Laf-Mir-145_5p |
| mirBase accession | None |
| Sequence |
0- GUCCAGUUUUCCCAGGAAUCCCU -23
Get sequence
|
| Star sequence | Laf-Mir-145_3p* |
| mirBase accession | None |
| Sequence |
38- GGAUUCCUGGAAAUACUGUUCU -60
Get sequence
|
