MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-145-P1

Family name MIR-145 (all species)
Seed UCCAGUU
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-145
Paralogues Xla-Mir-145-P2 
Orthologues Aca-Mir-145  Ami-Mir-145  Bta-Mir-145  Cfa-Mir-145  Cja-Mir-145  Cli-Mir-145  Cmi-Mir-145  Cpi-Mir-145  Cpo-Mir-145  Dno-Mir-145  Dre-Mir-145  Ebu-Mir-145  Eca-Mir-145  Ete-Mir-145  Gga-Mir-145  Gja-Mir-145  Gmo-Mir-145  Hsa-Mir-145  Laf-Mir-145  Lch-Mir-145  Loc-Mir-145  Mal-Mir-145  Mdo-Mir-145  Mml-Mir-145  Mmr-Mir-145  Mmu-Mir-145  Mun-Mir-145  Neu-Mir-145  Oan-Mir-145  Ocu-Mir-145  Pab-Mir-145  Pbv-Mir-145  Pma-Mir-145  Rno-Mir-145  Sha-Mir-145  Spt-Mir-145  Sto-Mir-145  Tgu-Mir-145  Xtr-Mir-145 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030728.1: 33608579-33608638 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-145-P1)		 Mir-145-P1 NC_030728.1: 33608579-33608638 [-] UCSC Ensembl
Mir-143-P1 NC_030728.1: 33609524-33609578 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACAGAGUUAUUCGUGACCUAUUCCUCAAGGUCCAGUUUUCCCAGGAAUCCCUUGGGUGCUGUGGUGGGGAUUCCUGGAAAUACUGUUCUUGGGGUGUAGGCGUGGCAACUGGAAGCCUC
Get precursor sequence
Structure
        10          20        30        40        50          
CACAGAGUUAUUCGUGA--|    U        UC    U  C            UGGGUG 
                   CCUAU CCUCAAGG  CAGU UU CCAGGAAUCCCU      \
                   GGAUG GGGGUUCU  GUCA AA GGUCCUUAGGGG      C
CUCCGAAGGUCAACGGUGC^    U        U-    U  A            UGGUGU 
.       110       100        90         80        70
Deep sequencing
Go to detailed chart
CommentThere are Dicer cuts -1 and -2 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-145-P1_5p
mirBase accessionMIMAT0046460
Sequence 
0- GUCCAGUUUUCCCAGGAAUCCCU -23
Get sequence
Star sequence

Xla-Mir-145-P1_3p*
mirBase accessionMIMAT0046461
Sequence 
38- GGAUUCCUGGAAAUACUGUUCU -60
Get sequence