MirGeneDB ID | Cmi-Mir-145 |
Family name |
MIR-145 (all species) |
Seed |
UCCAGUU |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aca-Mir-145
Ami-Mir-145
Bta-Mir-145
Cfa-Mir-145
Cja-Mir-145
Cli-Mir-145
Cpi-Mir-145
Cpo-Mir-145
Dno-Mir-145
Dre-Mir-145
Ebu-Mir-145
Eca-Mir-145
Ete-Mir-145
Gga-Mir-145
Gja-Mir-145
Gmo-Mir-145
Hsa-Mir-145
Laf-Mir-145
Lch-Mir-145
Loc-Mir-145
Mal-Mir-145
Mdo-Mir-145
Mml-Mir-145
Mmr-Mir-145
Mmu-Mir-145
Mun-Mir-145
Neu-Mir-145
Oan-Mir-145
Ocu-Mir-145
Pab-Mir-145
Pbv-Mir-145
Pma-Mir-145
Rno-Mir-145
Sha-Mir-145
Spt-Mir-145
Sto-Mir-145
Tgu-Mir-145
Xla-Mir-145-P1
Xla-Mir-145-P2
Xtr-Mir-145
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI636010.1: 208213-208272 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUCCGAUCUUCCUGUGCCCUUCUCCUCAGGGUCCAGUUUUCCCAGGAAUCCCUUCUGUGAUGAUAAGGGGAUUCCUGGAAAUACUGUUCUUGGGGGCAAGGCUUGGCGGCUGAAGAUCAU
Get precursor sequence
|
Structure | 10 20 30 40 50
CUCCGAUCUUCCUGUGC--| C UC U C UCUGUG
CCUU UCCUCAGGG CAGU UU CCAGGAAUCCCU \
GGAA GGGGGUUCU GUCA AA GGUCCUUAGGGG A
UACUAGAAGUCGGCGGUUC^ C U- U A AAUAGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There are Dicer cuts -1 and -2 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Cmi-Mir-145_5p |
mirBase accession | None |
Sequence |
0- GUCCAGUUUUCCCAGGAAUCCCU -23
Get sequence
|
Star sequence |
Cmi-Mir-145_3p* |
mirBase accession | None |
Sequence |
38- GGAUUCCUGGAAAUACUGUUCU -60
Get sequence
|