MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-145

Family name MIR-145 (all species)
Seed UCCAGUU
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-145
Paralogues
Orthologues Aca-Mir-145  Ami-Mir-145  Bta-Mir-145  Cfa-Mir-145  Cja-Mir-145  Cmi-Mir-145  Cpi-Mir-145  Cpo-Mir-145  Dno-Mir-145  Dre-Mir-145  Ebu-Mir-145  Eca-Mir-145  Ete-Mir-145  Gga-Mir-145  Gja-Mir-145  Gmo-Mir-145  Hsa-Mir-145  Laf-Mir-145  Lch-Mir-145  Loc-Mir-145  Mal-Mir-145  Mdo-Mir-145  Mml-Mir-145  Mmr-Mir-145  Mmu-Mir-145  Mun-Mir-145  Neu-Mir-145  Oan-Mir-145  Ocu-Mir-145  Pab-Mir-145  Pbv-Mir-145  Pma-Mir-145  Rno-Mir-145  Sha-Mir-145  Spt-Mir-145  Sto-Mir-145  Tgu-Mir-145  Xla-Mir-145-P1  Xla-Mir-145-P2  Xtr-Mir-145 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold395: 918682-918741 [+]
Clustered miRNAs
(< 50kb from Mir-145)		 Mir-143 scaffold395: 918258-918312 [+]
Mir-145 scaffold395: 918682-918741 [+]
Precursor
(pre-Mir +30nt flank)
GCGGAGAGCCCAGGUCGCCGUGCCCUCAGGGUCCAGUUUUCCCAGGAAUCCCUUAGGCGCUACGUUGGGGAUUCCUGGAAAUACUGUUCUUGAGGCCACGGNNNNNNNNNNNNNNNNNNN
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Structure
        10          20        30        40        50          
GCGGAGAGCCCAGGUCG--|    C        UC    U  C            UAGGCG 
                   CCGUG CCUCAGGG  CAGU UU CCAGGAAUCCCU      \
                   GGCAC GGAGUUCU  GUCA AA GGUCCUUAGGGG      C
NNNNNNNNNNNNNNNNNNN^    C        U-    U  A            UUGCAU 
.       110       100        90         80        70
Deep sequencing
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CommentThere is a second Dicer cut -2 on both arms.
3' NTU No
MotifsNo
Tissue expression
-   +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-145_5p
mirBase accessionMIMAT0038533
Sequence 
0- GUCCAGUUUUCCCAGGAAUCCCU -23
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Star sequence

Cli-Mir-145_3p*
mirBase accessionMIMAT0038534
Sequence 
38- GGAUUCCUGGAAAUACUGUUCU -60
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