MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-145

Family name MIR-145 (all species)
Seed UCCAGUU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-145
Paralogues
Orthologues Aca-Mir-145  Ami-Mir-145  Bta-Mir-145  Cfa-Mir-145  Cja-Mir-145  Cli-Mir-145  Cmi-Mir-145  Cpi-Mir-145  Cpo-Mir-145  Dno-Mir-145  Dre-Mir-145  Ebu-Mir-145  Eca-Mir-145  Ete-Mir-145  Gga-Mir-145  Gja-Mir-145  Hsa-Mir-145  Laf-Mir-145  Lch-Mir-145  Loc-Mir-145  Mal-Mir-145  Mdo-Mir-145  Mml-Mir-145  Mmr-Mir-145  Mmu-Mir-145  Mun-Mir-145  Neu-Mir-145  Oan-Mir-145  Ocu-Mir-145  Pab-Mir-145  Pbv-Mir-145  Pma-Mir-145  Rno-Mir-145  Sha-Mir-145  Spt-Mir-145  Sto-Mir-145  Tgu-Mir-145  Xla-Mir-145-P1  Xla-Mir-145-P2  Xtr-Mir-145 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 scaffold06411: 3160-3221 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-145)		 Mir-145 scaffold06411: 3160-3221 [-] UCSC Ensembl
Mir-143 scaffold06411: 3417-3471 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAUAAGAUCUUGUUCCCCUUUCUCCCGGGGUCCAGUUUUCCCAGGAAUCCCUUGUUGAACAUGAAAGCGGGAUUCCUGGAAAUACUGUUCUUGGGGGCGGGGCUUAGCAGCCUUUUAAAAG
Get precursor sequence
Structure
        10          20        30        40        50        60 
CAAUAAGAUCUUGUUCC--|  UU         UC    U  C           UUGUUGAA 
                   CCU  CUCCCGGGG  CAGU UU CCAGGAAUCCC        \
                   GGG  GGGGGUUCU  GUCA AA GGUCCUUAGGG        C
GAAAAUUUUCCGACGAUUC^  GC         U-    U  A           CGAAAGUA 
120       110       100        90         80        70
Deep sequencing
Go to detailed chart
CommentThere are Dicer sites -1 and -2 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-145_5p
mirBase accessionMIMAT0044334
Sequence 
0- GUCCAGUUUUCCCAGGAAUCCCU -23
Get sequence
Star sequence

Gmo-Mir-145_3p*
mirBase accessionMIMAT0044335
Sequence 
40- GGAUUCCUGGAAAUACUGUUCU -62
Get sequence