MirGeneDB ID | Pab-Mir-145 |
Family name |
MIR-145 (all species) |
Seed |
UCCAGUU |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aca-Mir-145
Ami-Mir-145
Bta-Mir-145
Cfa-Mir-145
Cja-Mir-145
Cli-Mir-145
Cmi-Mir-145
Cpi-Mir-145
Cpo-Mir-145
Dno-Mir-145
Dre-Mir-145
Ebu-Mir-145
Eca-Mir-145
Ete-Mir-145
Gga-Mir-145
Gja-Mir-145
Gmo-Mir-145
Hsa-Mir-145
Laf-Mir-145
Lch-Mir-145
Loc-Mir-145
Mal-Mir-145
Mdo-Mir-145
Mml-Mir-145
Mmr-Mir-145
Mmu-Mir-145
Mun-Mir-145
Neu-Mir-145
Oan-Mir-145
Ocu-Mir-145
Pbv-Mir-145
Pma-Mir-145
Rno-Mir-145
Sha-Mir-145
Spt-Mir-145
Sto-Mir-145
Tgu-Mir-145
Xla-Mir-145-P1
Xla-Mir-145-P2
Xtr-Mir-145
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054683.2: 158064130-158064189 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGGCCACUCACUCCCACCUUGUCCUCACGGUCCAGUUUUCCCAGGAAUCCCUUAGAUGCUAAGAUGGGGAUUCCUGGAAAUACUGUUCUUGAGGUCAUGGUUUCACAGCUGGAUUCGCC
Get precursor sequence
|
Structure | 10 20 30 40 50
AAGGCCACUCACUCCCA--| U U C UC U C UAGAUG
CC UG CCUCA GG CAGU UU CCAGGAAUCCCU \
GG AC GGAGU UC GUCA AA GGUCCUUAGGGG C
CCGCUUAGGUCGACACUUU^ U U - UU U A UAGAAU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -2 on both arms. Although there is a templated T at the 3' end of the 3p arm, the post-transcriptional addition of a terminal 3' U is supported by the CAGE data from de Rie et al. (2017). |
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Pab-Mir-145_5p |
mirBase accession | None |
Sequence |
0- GUCCAGUUUUCCCAGGAAUCCCU -23
Get sequence
|
Star sequence |
Pab-Mir-145_3p* |
mirBase accession | None |
Sequence |
38- GGAUUCCUGGAAAUACUGUUCU -60
Get sequence
|