MirGeneDB ID | Pab-Mir-145 |
---|---|
Family name | MIR-145 (all species) |
Seed | UCCAGUU |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | |
Orthologues | Aca-Mir-145 Ami-Mir-145 Bta-Mir-145 Cfa-Mir-145 Cja-Mir-145 Cli-Mir-145 Cmi-Mir-145 Cpi-Mir-145 Cpo-Mir-145 Dno-Mir-145 Dre-Mir-145 Ebu-Mir-145 Eca-Mir-145 Ete-Mir-145 Gga-Mir-145 Gja-Mir-145 Gmo-Mir-145 Hsa-Mir-145 Laf-Mir-145 Lch-Mir-145 Loc-Mir-145 Mal-Mir-145 Mdo-Mir-145 Mml-Mir-145 Mmr-Mir-145 Mmu-Mir-145 Mun-Mir-145 Neu-Mir-145 Oan-Mir-145 Ocu-Mir-145 Pbv-Mir-145 Pma-Mir-145 Rno-Mir-145 Sha-Mir-145 Spt-Mir-145 Sto-Mir-145 Tgu-Mir-145 Xla-Mir-145-P1 Xla-Mir-145-P2 Xtr-Mir-145 |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054683.2: 158064130-158064189 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AAGGCCACUCACUCCCACCUUGUCCUCACGGUCCAGUUUUCCCAGGAAUCCCUUAGAUGCUAAGAUGGGGAUUCCUGGAAAUACUGUUCUUGAGGUCAUGGUUUCACAGCUGGAUUCGCCGet precursor sequence |
Structure | 10 20 30 40 50 AAGGCCACUCACUCCCA--| U U C UC U C UAGAUG CC UG CCUCA GG CAGU UU CCAGGAAUCCCU \ GG AC GGAGU UC GUCA AA GGUCCUUAGGGG C CCGCUUAGGUCGACACUUU^ U U - UU U A UAGAAU . 110 100 90 80 70 |
Deep sequencing | |
Comment | There is a second Dicer cut -2 on both arms. Although there is a templated T at the 3' end of the 3p arm, the post-transcriptional addition of a terminal 3' U is supported by the CAGE data from de Rie et al. (2017). |
3' NTU | Yes |
Motifs | CNNC at 3p(+17) |
Mature sequence | Pab-Mir-145_5p |
mirBase accession | None |
Sequence |
0- GUCCAGUUUUCCCAGGAAUCCCU -23
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|
Star sequence | Pab-Mir-145_3p* |
mirBase accession | None |
Sequence |
38- GGAUUCCUGGAAAUACUGUUCU -60
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