MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-143

Family name MIR-143 (all species)
Seed GAGAUGA
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-143
Paralogues
Orthologues Aca-Mir-143  Ami-Mir-143  Bta-Mir-143  Cfa-Mir-143  Cja-Mir-143  Cli-Mir-143  Cmi-Mir-143  Cpi-Mir-143  Cpo-Mir-143  Dno-Mir-143  Dre-Mir-143  Ebu-Mir-143  Eca-Mir-143  Ete-Mir-143  Gga-Mir-143  Gja-Mir-143  Gmo-Mir-143  Hsa-Mir-143  Laf-Mir-143  Lch-Mir-143  Loc-Mir-143  Mal-Mir-143  Mdo-Mir-143  Mml-Mir-143  Mmr-Mir-143  Mmu-Mir-143  Mun-Mir-143  Neu-Mir-143  Oan-Mir-143  Ocu-Mir-143  Pab-Mir-143  Pbv-Mir-143  Rno-Mir-143  Sha-Mir-143  Spt-Mir-143  Sto-Mir-143  Tgu-Mir-143  Xla-Mir-143-P1  Xla-Mir-143-P2  Xtr-Mir-143 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046089.1: 6110951-6111006 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-143)		 Mir-143 NC_046089.1: 6110951-6111006 [+] UCSC Ensembl
Mir-145 NC_046089.1: 6112208-6112266 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACACCAAUACGGACGCGAGCGUACCCGGGGGUGCAGUGCUUUACCUCUGGUUGGGUUGAGAGUCUGAGAUGAAGCACUGUAACUCCGGAUGCCGCUUCCUAACCUGCUCCACCUC
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Structure
        10         20         30        40        50       
GACACCAAUACGGACGC-    -|  C      G            C   UGGUUGGG 
                  GAGC GUA CCGGGG UGCAGUGCUUUA CUC        U
                  UUCG CGU GGCCUC AUGUCACGAAGU GAG        U
CUCCACCUCGUCCAAUCC    C^  A      A            A   UCUGAGAG 
    110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-143_5p*
mirBase accessionMIMAT0019472
Sequence 
0- GGUGCAGUGCUUUACCUCUGG -21
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Mature sequence

Pma-Mir-143_3p
mirBase accessionMIMAT0019473
Sequence 
35- UGAGAUGAAGCACUGUAACUC -56
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