MirGeneDB 3.0

MirGeneDB ID

Ami-Mir-202

Family name MIR-202 (all species)
Seed UCCUAUG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-202
Paralogues
Orthologues Aca-Mir-202  Bta-Mir-202  Cfa-Mir-202  Cja-Mir-202  Cli-Mir-202  Cmi-Mir-202  Cpi-Mir-202  Cpo-Mir-202  Dno-Mir-202  Dre-Mir-202  Ebu-Mir-202  Eca-Mir-202  Ete-Mir-202  Gga-Mir-202  Gja-Mir-202  Gmo-Mir-202  Hsa-Mir-202  Laf-Mir-202  Lch-Mir-202  Loc-Mir-202  Mal-Mir-202  Mml-Mir-202  Mmr-Mir-202  Mmu-Mir-202  Mun-Mir-202  Neu-Mir-202  Oan-Mir-202  Ocu-Mir-202  Pab-Mir-202  Pbv-Mir-202  Pma-Mir-202-P5  Pma-Mir-202-P6  Rno-Mir-202  Sha-Mir-202  Spt-Mir-202  Sto-Mir-202  Tgu-Mir-202  Tni-Mir-202  Xla-Mir-202-P3  Xla-Mir-202-P4  Xtr-Mir-202-P1  Xtr-Mir-202-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017708881.1: 1910438-1910495 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AUUUCCAUUACUUUUGCUCGUUGUUCCUUUUUCCUAUGCAUAUACUUCUUUGAGAAUUGGAUCUAAAGAGGCAUAGGGCAUGGGAAAAUGGGGCGACUGAGGUACUCCACCAGUCACC
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Structure
        10          20        30        40         50        
AUUUCCAUUACUUUUGCUC--        U           A-|  A       GAGAAU 
                     GUUGUUCC UUUUCCUAUGC  UAU CUUCUUU      \
                     CAGCGGGG AAAAGGGUACG  AUA GGAGAAA      U
CCACUGACCACCUCAUGGAGU        U           GG^  C       UCUAGG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ami-Mir-202_5p

mirBase accessionMIMAT0038222
Sequence
0- UUCCUAUGCAUAUACUUCUUU -21
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Star sequence

Ami-Mir-202_3p* (predicted)

mirBase accessionNone
Sequence
36- AGAGGCAUAGGGCAUGGGAAAA -58
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