| MirGeneDB ID | Lch-Mir-202 |
|---|---|
| Family name | MIR-202 (all species) |
| Seed | UCCUAUG |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-202 Ami-Mir-202 Bta-Mir-202 Cfa-Mir-202 Cja-Mir-202 Cli-Mir-202 Cmi-Mir-202 Cpi-Mir-202 Cpo-Mir-202 Dno-Mir-202 Dre-Mir-202 Ebu-Mir-202 Eca-Mir-202 Ete-Mir-202 Gga-Mir-202 Gja-Mir-202 Gmo-Mir-202 Hsa-Mir-202 Laf-Mir-202 Loc-Mir-202 Mal-Mir-202 Mml-Mir-202 Mmr-Mir-202 Mmu-Mir-202 Mun-Mir-202 Neu-Mir-202 Oan-Mir-202 Ocu-Mir-202 Pab-Mir-202 Pbv-Mir-202 Pma-Mir-202-P5 Pma-Mir-202-P6 Rno-Mir-202 Sha-Mir-202 Spt-Mir-202 Sto-Mir-202 Tgu-Mir-202 Tni-Mir-202 Xla-Mir-202-P3 Xla-Mir-202-P4 Xtr-Mir-202-P1 Xtr-Mir-202-P2 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH127112.1: 439533-439590 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | UUCAAAAAUGUCUUUACUCGUUGUUCCUUUUUCCUAUGCAUAUACCUCUUUGAGAAUCAGAUAUGAAGAGGCAUAGGGCAUGGGAAAAUGGGGCGACUGAGGUCCCCCUCCGUUGAUCGet precursor sequence |
| Structure | 10 20 30 40 50 UUCAAAAAUGUCUUUACUC-- U A-| A GAGAAU GUUGUUCC UUUUCCUAUGC UAU CCUCUUU \ CAGCGGGG AAAAGGGUACG AUA GGAGAAG C CUAGUUGCCUCCCCCUGGAGU U GG^ C UAUAGA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-202_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUCCUAUGCAUAUACCUCUUU -21
Get sequence
|
| Star sequence | Lch-Mir-202_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- AGAGGCAUAGGGCAUGGGAAAA -58
Get sequence
|
