MirGeneDB 3.0

MirGeneDB ID

Laf-Mir-202

Family name MIR-202 (all species)
Seed UCCUAUG
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues Aca-Mir-202  Ami-Mir-202  Bta-Mir-202  Cfa-Mir-202  Cja-Mir-202  Cli-Mir-202  Cmi-Mir-202  Cpi-Mir-202  Cpo-Mir-202  Dno-Mir-202  Dre-Mir-202  Ebu-Mir-202  Eca-Mir-202  Ete-Mir-202  Gga-Mir-202  Gja-Mir-202  Gmo-Mir-202  Hsa-Mir-202  Lch-Mir-202  Loc-Mir-202  Mal-Mir-202  Mml-Mir-202  Mmr-Mir-202  Mmu-Mir-202  Mun-Mir-202  Neu-Mir-202  Oan-Mir-202  Ocu-Mir-202  Pab-Mir-202  Pbv-Mir-202  Pma-Mir-202-P5  Pma-Mir-202-P6  Rno-Mir-202  Sha-Mir-202  Spt-Mir-202  Sto-Mir-202  Tgu-Mir-202  Tni-Mir-202  Xla-Mir-202-P3  Xla-Mir-202-P4  Xtr-Mir-202-P1  Xtr-Mir-202-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_000001905.1_Loxafr3.0)
GL010099.1: 10261033-10261089 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUCUUGCAGAAUCUGCUCGUCGUUCCUUUUUCCUAUGCAUAUACUUCUUUGAGGAUCUGACCUAAAGAGGUAUAGGGCAUGGGAAAAUGGGGCGACGGGGUCCUCCUCAGAGGCCU
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Structure
        10         20        30        40         50        
CUUCUUGCAGAAUCUGC-          U           A-|           AGGAU 
                  UCGUCGUUCC UUUUCCUAUGC  UAUACUUCUUUG     \
                  GGCAGCGGGG AAAAGGGUACG  AUAUGGAGAAAU     C
UCCGGAGACUCCUCCUGG          U           GG^           CCAGU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Wh
Mature sequence

Laf-Mir-202_5p

mirBase accessionNone
Sequence
0- UUCCUAUGCAUAUACUUCUUUG -22
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Star sequence

Laf-Mir-202_3p* (predicted)

mirBase accessionNone
Sequence
35- AAGAGGUAUAGGGCAUGGGAAA -57
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