MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-202

Family name MIR-202 (all species)
Seed UCCUAUG
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-202
Paralogues
Orthologues Aca-Mir-202  Ami-Mir-202  Bta-Mir-202  Cfa-Mir-202  Cja-Mir-202  Cli-Mir-202  Cmi-Mir-202  Cpi-Mir-202  Cpo-Mir-202  Dno-Mir-202  Dre-Mir-202  Ebu-Mir-202  Eca-Mir-202  Ete-Mir-202  Gga-Mir-202  Gja-Mir-202  Hsa-Mir-202  Laf-Mir-202  Lch-Mir-202  Loc-Mir-202  Mal-Mir-202  Mml-Mir-202  Mmr-Mir-202  Mmu-Mir-202  Mun-Mir-202  Neu-Mir-202  Oan-Mir-202  Ocu-Mir-202  Pab-Mir-202  Pbv-Mir-202  Pma-Mir-202-P5  Pma-Mir-202-P6  Rno-Mir-202  Sha-Mir-202  Spt-Mir-202  Sto-Mir-202  Tgu-Mir-202  Tni-Mir-202  Xla-Mir-202-P3  Xla-Mir-202-P4  Xtr-Mir-202-P1  Xtr-Mir-202-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 contig89417: 562-619 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCCCAGACUUUUUCACUCGCUGUUCCUUUUUCCUAUGCAUAUACCUCUUUGAGACUUAACUUUAAAGAGGAAUAGGGCAUGGGAAAAUGGGGCUGCAGAGGUAAUACACCCAACGCC
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Structure
        10          20        30        40         50        
GGCCCAGACUUUUUCACUC--  U     U           A-|  A       GAGACU 
                     GC GUUCC UUUUCCUAUGC  UAU CCUCUUU      \
                     CG CGGGG AAAAGGGUACG  AUA GGAGAAA      U
CCGCAACCCACAUAAUGGAGA  U     U           GG^  A       UUUCAA 
      110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +2 relative to what is annotated here.
3' NTU Unknown
MotifsNo
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-202_5p
mirBase accessionMIMAT0044083
Sequence 
0- UUCCUAUGCAUAUACCUCUUU -21
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Star sequence

Gmo-Mir-202_3p*
mirBase accessionMIMAT0044083
Sequence 
36- AGAGGAAUAGGGCAUGGGAAAA -58
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