MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-202

Family name MIR-202 (all species)
Seed UCCUAUG
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-202  Ami-Mir-202  Bta-Mir-202  Cfa-Mir-202  Cja-Mir-202  Cli-Mir-202  Cmi-Mir-202  Cpi-Mir-202  Cpo-Mir-202  Dno-Mir-202  Dre-Mir-202  Ebu-Mir-202  Eca-Mir-202  Ete-Mir-202  Gga-Mir-202  Gja-Mir-202  Gmo-Mir-202  Hsa-Mir-202  Laf-Mir-202  Lch-Mir-202  Loc-Mir-202  Mal-Mir-202  Mml-Mir-202  Mmr-Mir-202  Mmu-Mir-202  Mun-Mir-202  Neu-Mir-202  Oan-Mir-202  Pab-Mir-202  Pbv-Mir-202  Pma-Mir-202-P5  Pma-Mir-202-P6  Rno-Mir-202  Sha-Mir-202  Spt-Mir-202  Sto-Mir-202  Tgu-Mir-202  Tni-Mir-202  Xla-Mir-202-P3  Xla-Mir-202-P4  Xtr-Mir-202-P1  Xtr-Mir-202-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(oryCun2_add)		 1964293620: 526-583 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAGCAGCCCGGCCCAUGCGUGGCUCCGUCUUCCUAUGCAUAUACUUCUUUGAGGGUCUGGCCUAAAGAGGUGUAGAGCAUGGGAAAAUGGAGCCACAGCCGCCUCCACCCACCGGGG
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Structure
        10          20        30        40         50        
GGAGCAGCCCGGCCCAU-  -          C         A-|          GAGGGU 
                  GC GUGGCUCCGU UUCCUAUGC  UAUACUUCUUU      \
                  CG CACCGAGGUA AAGGGUACG  AUGUGGAGAAA      C
GGGGCCACCCACCUCCGC  A          A         AG^          UCCGGU 
      110       100        90        80        70        60
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
He Ki Te To Wh
Mature sequence

Ocu-Mir-202_5p
mirBase accessionNone
Sequence 
0- UUCCUAUGCAUAUACUUCUUU -21
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Star sequence

Ocu-Mir-202_3p*
mirBase accessionNone
Sequence 
36- AGAGGUGUAGAGCAUGGGAAAA -58
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