| MirGeneDB ID | Loc-Mir-202 |
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| Family name |
MIR-202 (all species) |
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| Seed |
UCCUAUG |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Aca-Mir-202
Ami-Mir-202
Bta-Mir-202
Cfa-Mir-202
Cja-Mir-202
Cli-Mir-202
Cmi-Mir-202
Cpi-Mir-202
Cpo-Mir-202
Dno-Mir-202
Dre-Mir-202
Ebu-Mir-202
Eca-Mir-202
Ete-Mir-202
Gga-Mir-202
Gja-Mir-202
Gmo-Mir-202
Hsa-Mir-202
Laf-Mir-202
Lch-Mir-202
Mal-Mir-202
Mml-Mir-202
Mmr-Mir-202
Mmu-Mir-202
Mun-Mir-202
Neu-Mir-202
Oan-Mir-202
Ocu-Mir-202
Pab-Mir-202
Pbv-Mir-202
Pma-Mir-202-P5
Pma-Mir-202-P6
Rno-Mir-202
Sha-Mir-202
Spt-Mir-202
Sto-Mir-202
Tgu-Mir-202
Tni-Mir-202
Xla-Mir-202-P3
Xla-Mir-202-P4
Xtr-Mir-202-P1
Xtr-Mir-202-P2
|
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| Node of Origin (locus) |
Vertebrata
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(LepOcu1) |
LG5: 11341875-11341932 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GUCAGAAGGCACUGUGCUCGUUGUUCCUUUUUCCUAUGCAUAUACCUCUUUGAGACGUAGCUGUAAAGAGGUAUACGGCAUGGGAAAAUGGGGCUGCAGAGGUAAUCUACUUGAUCAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUCAGAAGGCACUGUGCUC-- U U A-| GAGACG
GU GUUCC UUUUCCUAUGC UAUACCUCUUU \
CG CGGGG AAAAGGGUACG AUAUGGAGAAA U
CACUAGUUCAUCUAAUGGAGA U U GC^ UGUCGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut +1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Mature sequence |
Loc-Mir-202_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUCCUAUGCAUAUACCUCUUU -21
Get sequence
|
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| Star sequence |
Loc-Mir-202_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- AGAGGUAUACGGCAUGGGAAAA -58
Get sequence
|
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