MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-338-P1

Family name MIR-338 (all species)
Seed CCAGCAU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-338-2
Paralogues Ami-Mir-338-P2 
Orthologues Cli-Mir-338-P1  Cmi-Mir-338-P1  Cpi-Mir-338-P1  Dre-Mir-338-P1  Ebu-Mir-338-o1  Gmo-Mir-338-P1  Lch-Mir-338-P1  Loc-Mir-338-P1  Mal-Mir-338-P1  Mun-Mir-338-P1  Sto-Mir-338-P1  Tgu-Mir-338-P1  Tni-Mir-338-P1  Xla-Mir-338-P1a  Xla-Mir-338-P1b  Xtr-Mir-338-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017711568.1: 12303543-12303602 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AGACUGUCAUUGCAAAUGUUUAUUUCUGGCAACACUAUCCUGAUGCUGUCUGAGUAUGUGGUAAAGCUCCAGCAUCAGUGAUUUUGUUGUUAGUGGUAAAUUCAAGCAGCUAAAGUUAUU
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Structure
        10          20        30         40          50        
AGACUGUCAUUGCAAAU--      UU         CU   -         U--| GAGUAU 
                   GUUUAU  CUGGCAACA  AUC CUGAUGCUG   CU      \
                   UAAAUG  GAUUGUUGU  UAG GACUACGAC   GA      G
UUAUUGAAAUCGACGAACU      GU         UU   U         CUC^ AAUGGU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Ami-Mir-338-P1_5p*
mirBase accessionMIMAT0038270
Sequence 
0- AACACUAUCCUGAUGCUGUCUGA -23
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Mature sequence

Ami-Mir-338-P1_3p
mirBase accessionMIMAT0038269
Sequence 
37- UCCAGCAUCAGUGAUUUUGUUGU -60
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