MirGeneDB 3.0
MirGeneDB ID

Mun-Mir-338-P1

Family name MIR-338 (all species)
Seed CCAGCAU
Species Microcaecilia (Microcaecilia unicolor)
MiRBase ID
Paralogues Mun-Mir-338-P2e  Mun-Mir-338-P2f 
Orthologues Ami-Mir-338-P1  Cli-Mir-338-P1  Cmi-Mir-338-P1  Cpi-Mir-338-P1  Dre-Mir-338-P1  Ebu-Mir-338-o1  Gmo-Mir-338-P1  Lch-Mir-338-P1  Loc-Mir-338-P1  Mal-Mir-338-P1  Sto-Mir-338-P1  Tgu-Mir-338-P1  Tni-Mir-338-P1  Xla-Mir-338-P1a  Xla-Mir-338-P1b  Xtr-Mir-338-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Mun_miRNA_loci)		 338-P1_LR594639.1:26234570-26234711: 42-101 [-]
Precursor
(pre-Mir +30nt flank)
AAUAAUGCAAUGCAAUUGUUUAUCUCUGGUAACAAUAUCCUGAUGCUGUCUGAGUAUGUGAUAAAGCUCCAGCAUCAGUGAUUUUGUUGUUGGUGGUAAAUUCAAGCAGCCAAAGCUGUU
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Structure
        10          20        30         40          50        
AAUAAUGCAAUGCAAUU--       U  GG      U   -         U--| GAGUAU 
                   GUUUAUC CU  UAACAA AUC CUGAUGCUG   CU      \
                   UAAAUGG GG  GUUGUU UAG GACUACGAC   GA      G
UUGUCGAAACCGACGAACU       U  UU      U   U         CUC^ AAUAGU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Mun-Mir-338-P1_5p*
mirBase accessionNone
Sequence 
0- AACAAUAUCCUGAUGCUGUCU -21
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Mature sequence

Mun-Mir-338-P1_3p
mirBase accessionNone
Sequence 
37- UCCAGCAUCAGUGAUUUUGUUGU -60
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