MirGeneDB ID | Cli-Mir-338-P1 |
Family name |
MIR-338 (all species) |
Seed |
CCAGCAU |
Species |
Rock pigeon (Columba livia) |
MiRBase ID |
cli-mir-338a
|
Paralogues |
Cli-Mir-338-P2
|
Orthologues |
Ami-Mir-338-P1
Cmi-Mir-338-P1
Cpi-Mir-338-P1
Dre-Mir-338-P1
Ebu-Mir-338-o1
Gmo-Mir-338-P1
Lch-Mir-338-P1
Loc-Mir-338-P1
Mal-Mir-338-P1
Mun-Mir-338-P1
Sto-Mir-338-P1
Tgu-Mir-338-P1
Tni-Mir-338-P1
Xla-Mir-338-P1a
Xla-Mir-338-P1b
Xtr-Mir-338-P1
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (colLiv2) |
scaffold1084: 334966-335025 [+]
|
Precursor (pre-Mir +30nt flank) |
AGAUUCUCGUUAUAAAUGUUUACUUCUAGCAACACUAUCCUGAUGCUGUCAGAGUAAGUGGUAAAGCUCCAGCAUCAGUGAUUUUGUUGUUAGUGGUAAAUUCAAGCAGCCAAAAAUGUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGAUUCUCGUUAUAAAU-- U CU -| UCA AAGU
GUUUACU CUAGCAACA AUC CUGAUGCUG GAGU G
UAAAUGG GAUUGUUGU UAG GACUACGAC CUCG G
AUGUAAAAACCGACGAACU U UU U^ --- AAAU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Cli-Mir-338-P1_5p* |
mirBase accession | MIMAT0038618 |
Sequence |
0- AACACUAUCCUGAUGCUGUCAGAGU -25
Get sequence
|
Mature sequence |
Cli-Mir-338-P1_3p |
mirBase accession | MIMAT0038619 |
Sequence |
37- UCCAGCAUCAGUGAUUUUGUUGU -60
Get sequence
|