MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-338-P1

Family name MIR-338 (all species)
Seed CCAGCAU
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-338-P2 
Orthologues Ami-Mir-338-P1  Cli-Mir-338-P1  Cpi-Mir-338-P1  Dre-Mir-338-P1  Ebu-Mir-338-o1  Gmo-Mir-338-P1  Lch-Mir-338-P1  Loc-Mir-338-P1  Mal-Mir-338-P1  Mun-Mir-338-P1  Sto-Mir-338-P1  Tgu-Mir-338-P1  Tni-Mir-338-P1  Xla-Mir-338-P1a  Xla-Mir-338-P1b  Xtr-Mir-338-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635884.1: 1248653-1248712 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGUUGCUAUAGCAAGUGUUCAUUUCUGGUAACAAUAUCCUGAUGCUGUCCGAGUAUGUGGAAAAGCUCCAGCAUCAGUGAUUUUGUUGCUAGUGGUGAAUUGAAGCAGCUAAGCUUUGC
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Structure
        10          20        30         40        50        60
GGGUUGCUAUAGCAAGU--      UU          U   -|        UCC    AUGU 
                   GUUCAU  CUGGUAACAA AUC CUGAUGCUG   GAGU    G
                   UAAGUG  GAUCGUUGUU UAG GACUACGAC   CUCG    G
CGUUUCGAAUCGACGAAGU      GU          U   U^        ---    AAAA 
.       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-338-P1_5p*
mirBase accessionNone
Sequence 
0- AACAAUAUCCUGAUGCUGUCCGAGU -25
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Mature sequence

Cmi-Mir-338-P1_3p
mirBase accessionNone
Sequence 
37- UCCAGCAUCAGUGAUUUUGUUGC -60
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