MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-338-P1

Family name MIR-338 (all species)
Seed CCAGCAU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-338-P2 
Orthologues Ami-Mir-338-P1  Cli-Mir-338-P1  Cmi-Mir-338-P1  Cpi-Mir-338-P1  Dre-Mir-338-P1  Ebu-Mir-338-o1  Gmo-Mir-338-P1  Loc-Mir-338-P1  Mal-Mir-338-P1  Mun-Mir-338-P1  Sto-Mir-338-P1  Tgu-Mir-338-P1  Tni-Mir-338-P1  Xla-Mir-338-P1a  Xla-Mir-338-P1b  Xtr-Mir-338-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH127205.1: 990819-990878 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUAUUGACCUGGCACAUGUUUGCCUCUGACAACAAUAUCCUGGUGCUGUCCGAGUAUGUGGAAAAGCUCCAGCAUCAGUGAUUUUGUUGUUAGAGGUGAAUUUAAGCAGCUAAACAUUUA
Get precursor sequence
Structure
        10          20        30         40        50        60
GUAUUGACCUGGCACAU--   UG             U   -|        UCC    AUGU 
                   GUU  CCUCUGACAACAA AUC CUGGUGCUG   GAGU    G
                   UAA  GGAGAUUGUUGUU UAG GACUACGAC   CUCG    G
AUUUACAAAUCGACGAAUU   GU             U   U^        ---    AAAA 
.       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Star sequence

Lch-Mir-338-P1_5p* (predicted)

mirBase accessionNone
Sequence
0- AACAAUAUCCUGGUGCUGUCCGAGU -25
Get sequence
Mature sequence

Lch-Mir-338-P1_3p (predicted)

mirBase accessionNone
Sequence
37- UCCAGCAUCAGUGAUUUUGUUGU -60
Get sequence