Mir-338-P2

MirGeneDB ID	Lch-Mir-338-P2
Family name	MIR-338 (all species)
Seed	CCAGCAU
Species	Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues	Lch-Mir-338-P1
Orthologues	Aca-Mir-338-P2 Ami-Mir-338-P2 Bta-Mir-338-P2 Bta-Mir-338-P2-as Cfa-Mir-338-P2 Cfa-Mir-338-P2-as Cja-Mir-338-P2 Cli-Mir-338-P2 Cmi-Mir-338-P2 Cpi-Mir-338-P2 Cpi-Mir-338-P2-as Cpo-Mir-338-P2 Dno-Mir-338-P2 Dre-Mir-338-P2a Dre-Mir-338-P2b Ebu-Mir-338-o2 Eca-Mir-338-P2 Eca-Mir-338-P2-as Ete-Mir-338-P2 Ete-Mir-338-P2-as Gga-Mir-338-P2 Gja-Mir-338-P2 Gmo-Mir-338-P2a Gmo-Mir-338-P2b Hsa-Mir-338-P2 Hsa-Mir-338-P2-as Laf-Mir-338-P2 Loc-Mir-338-P2 Mal-Mir-338-P2a Mal-Mir-338-P2b Mdo-Mir-338-P2 Mml-Mir-338-P2 Mml-Mir-338-P2-as Mmr-Mir-338-P2 Mmu-Mir-338-P2 Mmu-Mir-338-P2-as Mun-Mir-338-P2e Mun-Mir-338-P2f Neu-Mir-338-P2 Oan-Mir-338-P2 Ocu-Mir-338-P2 Pab-Mir-338-P2 Pab-Mir-338-P2-as Pbv-Mir-338-P2 Rno-Mir-338-P2 Rno-Mir-338-P2-as Sha-Mir-338-P2 Spt-Mir-338-P2 Sto-Mir-338-P2 Tgu-Mir-338-P2 Tgu-Mir-338-P2-as Tni-Mir-338-P2a Tni-Mir-338-P2b Xla-Mir-338-P2c Xla-Mir-338-P2d Xtr-Mir-338-P2
Node of Origin (locus)	Vertebrata
Node of Origin (family)	Vertebrata
Genome context (LatCha1_add)	JH126581.1: 1083401-1083462 [+] Ensembl
Precursor (pre-Mir +30nt flank)	UCUGUCCACCUGGCCUUGUUCACCUGCUACAACAAUAUCCUGGUGCUGAAUGAGUGGGACUUGGGAGACUCCAGCAUCAGUGAUUUUGUUGCGGAGGGUGAUCACUUGCAUCUGACUUCAGU Get precursor sequence
Structure	10 20 30 40 50 60 UCUGUCCACCUGGCCUU-- U G UA U -\| AAU GGGAC G UCACCU C CAACAA AUC CUGGUGCUG GAGU U C AGUGGG G GUUGUU UAG GACUACGAC CUCA U UGACUUCAGUCUACGUUCA U A GC U U^ --- GAGGG 120 110 100 90 80 70
Deep sequencing
3' NTU	Unknown
Motifs	UG at 5p(-14), CNNC at 3p(+17)
Star sequence	Lch-Mir-338-P2_5p* (predicted)
mirBase accession	None
Sequence	0- AACAAUAUCCUGGUGCUGAAUGAGU -25 Get sequence
Mature sequence	Lch-Mir-338-P2_3p (predicted)
mirBase accession	None
Sequence	39- UCCAGCAUCAGUGAUUUUGUUGC -62 Get sequence

Lch-Mir-338-P2

Lch-Mir-338-P2_5p* (predicted)

Lch-Mir-338-P2_3p (predicted)