Mir-338-P2

MirGeneDB ID	Cja-Mir-338-P2
Family name	MIR-338 (all species)
Seed	CCAGCAU
Species	White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues	Aca-Mir-338-P2 Ami-Mir-338-P2 Bta-Mir-338-P2 Bta-Mir-338-P2-as Cfa-Mir-338-P2 Cfa-Mir-338-P2-as Cli-Mir-338-P2 Cmi-Mir-338-P2 Cpi-Mir-338-P2 Cpi-Mir-338-P2-as Cpo-Mir-338-P2 Dno-Mir-338-P2 Dre-Mir-338-P2a Dre-Mir-338-P2b Ebu-Mir-338-o2 Eca-Mir-338-P2 Eca-Mir-338-P2-as Ete-Mir-338-P2 Ete-Mir-338-P2-as Gga-Mir-338-P2 Gja-Mir-338-P2 Gmo-Mir-338-P2a Gmo-Mir-338-P2b Hsa-Mir-338-P2 Hsa-Mir-338-P2-as Laf-Mir-338-P2 Lch-Mir-338-P2 Loc-Mir-338-P2 Mal-Mir-338-P2a Mal-Mir-338-P2b Mdo-Mir-338-P2 Mml-Mir-338-P2 Mml-Mir-338-P2-as Mmr-Mir-338-P2 Mmu-Mir-338-P2 Mmu-Mir-338-P2-as Mun-Mir-338-P2e Mun-Mir-338-P2f Neu-Mir-338-P2 Oan-Mir-338-P2 Ocu-Mir-338-P2 Pab-Mir-338-P2 Pab-Mir-338-P2-as Pbv-Mir-338-P2 Rno-Mir-338-P2 Rno-Mir-338-P2-as Sha-Mir-338-P2 Spt-Mir-338-P2 Sto-Mir-338-P2 Tgu-Mir-338-P2 Tgu-Mir-338-P2-as Tni-Mir-338-P2a Tni-Mir-338-P2b Xla-Mir-338-P2c Xla-Mir-338-P2d Xtr-Mir-338-P2
Node of Origin (locus)	Vertebrata
Node of Origin (family)	Vertebrata
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic)	CM021919.1: 132897635-132897693 [-] UCSC Ensembl
Precursor (pre-Mir +30nt flank)	AGCCCCAGAUGCCGCACGGCUUUCCCCUCCAACAAUAUCCUGGUGCUGAGUGAUGACUCACACGACUCCAGCAUCAGUGAUUUUGUUGAAGAGGGCAGCUGCCAGCCUCCCGACCUGCC Get precursor sequence
Structure	10 20 30 40 50 AGCCCCAGAUGCCGCAC-- UUC -- U - -\| GAUGAC GGCU CCCUC CAACAA AUC CUGGUGCU GAGU \ UCGA GGGAG GUUGUU UAG GACUACGA CUCA U CCGUCCAGCCCUCCGACCG C-- AA U U C^ GCACAC 110 100 90 80 70 60
Deep sequencing
3' NTU	No
Motifs	CNNC at 3p(+17)
Star sequence	Cja-Mir-338-P2_5p*
mirBase accession	None
Sequence	0- AACAAUAUCCUGGUGCUGAGU -21 Get sequence
Mature sequence	Cja-Mir-338-P2_3p
mirBase accession	None
Sequence	36- UCCAGCAUCAGUGAUUUUGUUGA -59 Get sequence

Cja-Mir-338-P2

Cja-Mir-338-P2_5p*

Cja-Mir-338-P2_3p