MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-338-P2

Family name MIR-338 (all species)
Seed CCAGCAU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Dre-Mir-338-P2b  Ebu-Mir-338-o2  Eca-Mir-338-P2  Eca-Mir-338-P2-as  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Laf-Mir-338-P2  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmr-Mir-338-P2  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Mun-Mir-338-P2e  Mun-Mir-338-P2f  Neu-Mir-338-P2  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pab-Mir-338-P2  Pab-Mir-338-P2-as  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Tni-Mir-338-P2b  Xla-Mir-338-P2c  Xla-Mir-338-P2d  Xtr-Mir-338-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021919.1: 132897635-132897693 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCCCCAGAUGCCGCACGGCUUUCCCCUCCAACAAUAUCCUGGUGCUGAGUGAUGACUCACACGACUCCAGCAUCAGUGAUUUUGUUGAAGAGGGCAGCUGCCAGCCUCCCGACCUGCC
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Structure
        10          20          30         40         50        
AGCCCCAGAUGCCGCAC--    UUC     --      U   -        -|   GAUGAC 
                   GGCU   CCCUC  CAACAA AUC CUGGUGCU GAGU      \
                   UCGA   GGGAG  GUUGUU UAG GACUACGA CUCA      U
CCGUCCAGCCCUCCGACCG    C--     AA      U   U        C^   GCACAC 
       110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-338-P2_5p*
mirBase accessionNone
Sequence 
0- AACAAUAUCCUGGUGCUGAGU -21
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Mature sequence

Cja-Mir-338-P2_3p
mirBase accessionNone
Sequence 
36- UCCAGCAUCAGUGAUUUUGUUGA -59
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