MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-338-P2

Family name MIR-338 (all species)
Seed CCAGCAU
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-338
Paralogues
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cja-Mir-338-P2  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Dre-Mir-338-P2b  Ebu-Mir-338-o2  Eca-Mir-338-P2  Eca-Mir-338-P2-as  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Laf-Mir-338-P2  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmr-Mir-338-P2  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Mun-Mir-338-P2e  Mun-Mir-338-P2f  Neu-Mir-338-P2  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pab-Mir-338-P2  Pab-Mir-338-P2-as  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Tni-Mir-338-P2b  Xla-Mir-338-P2c  Xla-Mir-338-P2d  Xtr-Mir-338-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 18: 9290670-9290730 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGCCCGUCCCACCUUGCUCCUCCUGCCCAACAAUAUCCUGGUGCUGAGUGAGUUGCACACAGAGACUCCAGCAUCAGUGAUUUUGUUGAGGAAGGGGAGCGCUGCAUCGGGGCCACCAG
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Structure
        10          20         30         40         50         
UGUGCCCGUCCCACCUU--     U   G  -      U   -        -|   GAGUUGC 
                   GCUCC CCU CC CAACAA AUC CUGGUGCU GAGU       \
                   CGAGG GGA GG GUUGUU UAG GACUACGA CUCA       A
GACCACCGGGGCUACGUCG     -   A  A      U   U        C^   GAGACAC 
 .       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-338-P2_5p*
mirBase accessionMIMAT0037551
Sequence 
0- AACAAUAUCCUGGUGCUGAGU -21
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Mature sequence

Gga-Mir-338-P2_3p
mirBase accessionMIMAT0037552
Sequence 
38- UCCAGCAUCAGUGAUUUUGUUGA -61
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