MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-338-P2

Family name MIR-338 (all species)
Seed CCAGCAU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-338-1
Paralogues Xtr-Mir-338-P1 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cja-Mir-338-P2  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Dre-Mir-338-P2b  Ebu-Mir-338-o2  Eca-Mir-338-P2  Eca-Mir-338-P2-as  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Laf-Mir-338-P2  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmr-Mir-338-P2  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Mun-Mir-338-P2e  Mun-Mir-338-P2f  Neu-Mir-338-P2  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pab-Mir-338-P2  Pab-Mir-338-P2-as  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Tni-Mir-338-P2b  Xla-Mir-338-P2c  Xla-Mir-338-P2d 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr10: 18675794-18675854 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUGGACGCCUCUUUUGGUUUGUCCCCUGGAACAAUAUCCUGAUGCUGAAUGAGUGGGACAUACAUGCUCCAGCAUCAGUGAUUUUGUUGCAGGCGGCACACAUUGCUCCUGGUCCAUCGG
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Structure
        10          20        30         40        50         
UCUGGACGCCUCUUUUG--  U    C    G     U   -|        AAUGAGUGGG 
                   GU UGUC CCUG AACAA AUC CUGAUGCUG          A
                   CA ACGG GGAC UUGUU UAG GACUACGAC          C
GGCUACCUGGUCCUCGUUA  C    C    G     U   U^        CUCGUACAUA 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An Br Em Em He Ve
Star sequence

Xtr-Mir-338-P2_5p*
mirBase accessionNone
Sequence 
0- AACAAUAUCCUGAUGCUGAAUG -22
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Mature sequence

Xtr-Mir-338-P2_3p
mirBase accessionMIMAT0003665
Sequence 
38- UCCAGCAUCAGUGAUUUUGUUGC -61
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Proposed targets TargetScanVert: xtr-miR-338