MirGeneDB 3.0
MirGeneDB ID

Mmu-Mir-338-P2

Family name MIR-338 (all species)
Seed CCAGCAU
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-338
Paralogues Mmu-Mir-338-P2-as 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cja-Mir-338-P2  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Dre-Mir-338-P2b  Ebu-Mir-338-o2  Eca-Mir-338-P2  Eca-Mir-338-P2-as  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Laf-Mir-338-P2  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmr-Mir-338-P2  Mun-Mir-338-P2e  Mun-Mir-338-P2f  Neu-Mir-338-P2  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pab-Mir-338-P2  Pab-Mir-338-P2-as  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Tni-Mir-338-P2b  Xla-Mir-338-P2c  Xla-Mir-338-P2d  Xtr-Mir-338-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(mm10)		 chr11: 120014780-120014837 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-338-P2)		 Mir-338-P2 chr11: 120014780-120014837 [-] UCSC Ensembl
Mir-338-P2-as chr11: 120014780-120014841 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCUCCAACGCUGCACAGGCCGUCCUCCCCAACAAUAUCCUGGUGCUGAGUGGGUGCACAGUGACUCCAGCAUCAGUGAUUUUGUUGAAGAGGGCAGCUGCCAGCCUCCUGCCCUGCC
Get precursor sequence
Structure
        10          20        30         40         50       
AGCUCCAACGCUGCACA--   C      CC      U   -        -|   GGGUG 
                   GGC GUCCUC  CAACAA AUC CUGGUGCU GAGU     C
                   UCG CGGGAG  GUUGUU UAG GACUACGA CUCA     A
CCGUCCCGUCCUCCGACCG   A      AA      U   U        C^   GUGAC 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Star sequence

Mmu-Mir-338-P2_5p*
mirBase accessionMIMAT0004647
Sequence 
0- AACAAUAUCCUGGUGCUGAGU -21
Get sequence
Proposed targets microrna.org: MIMAT0004647
TargetScanVert: mmu-miR-338-5p
miRDB: MIMAT0004647
Mature sequence

Mmu-Mir-338-P2_3p
mirBase accessionMIMAT0000582
Sequence 
35- UCCAGCAUCAGUGAUUUUGUUGA -58
Get sequence
Proposed targets microrna.org: MIMAT0000582
TargetScanVert: mmu-miR-338-3p
miRDB: MIMAT0000582