Mir-338-P2

MirGeneDB ID

Mmu-Mir-338-P2

Family name

MIR-338 (all species)

Seed

CCAGCAU

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-338

Paralogues

Mmu-Mir-338-P2-as

Orthologues

Aca-Mir-338-P2 Ami-Mir-338-P2 Bta-Mir-338-P2 Bta-Mir-338-P2-as Cfa-Mir-338-P2 Cfa-Mir-338-P2-as Cli-Mir-338-P2 Cmi-Mir-338-P2 Cpi-Mir-338-P2 Cpi-Mir-338-P2-as Cpo-Mir-338-P2 Dno-Mir-338-P2 Dre-Mir-338-P2a Dre-Mir-338-P2b Ebu-Mir-338-o2 Ete-Mir-338-P2 Ete-Mir-338-P2-as Gga-Mir-338-P2 Gja-Mir-338-P2 Gmo-Mir-338-P2a Gmo-Mir-338-P2b Hsa-Mir-338-P2 Hsa-Mir-338-P2-as Lch-Mir-338-P2 Loc-Mir-338-P2 Mal-Mir-338-P2a Mal-Mir-338-P2b Mdo-Mir-338-P2 Mml-Mir-338-P2 Mml-Mir-338-P2-as Mun-Mir-338-P2e Mun-Mir-338-P2f Oan-Mir-338-P2 Ocu-Mir-338-P2 Pbv-Mir-338-P2 Rno-Mir-338-P2 Rno-Mir-338-P2-as Sha-Mir-338-P2 Spt-Mir-338-P2 Sto-Mir-338-P2 Tgu-Mir-338-P2 Tgu-Mir-338-P2-as Tni-Mir-338-P2a Tni-Mir-338-P2b Xla-Mir-338-P2c Xla-Mir-338-P2d Xtr-Mir-338-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr11: 120014780-120014837 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-338-P2)

Mir-338-P2 chr11: 120014780-120014837 [-] UCSC Ensembl
Mir-338-P2-as chr11: 120014780-120014841 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCUCCAACGCUGCACAGGCCGUCCUCCCCAACAAUAUCCUGGUGCUGAGUGGGUGCACAGUGACUCCAGCAUCAGUGAUUUUGUUGAAGAGGGCAGCUGCCAGCCUCCUGCCCUGCC

Get precursor sequence

Structure

        10          20        30         40         50       
AGCUCCAACGCUGCACA--   C      CC      U   -        -|   GGGUG 
                   GGC GUCCUC  CAACAA AUC CUGGUGCU GAGU     C
                   UCG CGGGAG  GUUGUU UAG GACUACGA CUCA     A
CCGUCCCGUCCUCCGACCG   A      AA      U   U        C^   GUGAC 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

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Star sequence

Mmu-Mir-338-P2_5p*

mirBase accession

MIMAT0004647

Sequence

0- AACAAUAUCCUGGUGCUGAGU -21

Get sequence

Proposed targets

microrna.org: MIMAT0004647
TargetScanVert: mmu-miR-338-5p
miRDB: MIMAT0004647

Mature sequence

Mmu-Mir-338-P2_3p

mirBase accession

MIMAT0000582

Sequence

35- UCCAGCAUCAGUGAUUUUGUUGA -58

Get sequence

Proposed targets

microrna.org: MIMAT0000582
TargetScanVert: mmu-miR-338-3p
miRDB: MIMAT0000582