Mir-338-P2

MirGeneDB ID

Dno-Mir-338-P2

Family name

MIR-338 (all species)

Seed

CCAGCAU

Species

Nine-banded armadillo (Dasypus novemcinctus)

MiRBase ID

dno-mir-338

Paralogues

Orthologues

Aca-Mir-338-P2 Ami-Mir-338-P2 Bta-Mir-338-P2 Bta-Mir-338-P2-as Cfa-Mir-338-P2 Cfa-Mir-338-P2-as Cli-Mir-338-P2 Cmi-Mir-338-P2 Cpi-Mir-338-P2 Cpi-Mir-338-P2-as Cpo-Mir-338-P2 Dre-Mir-338-P2a Dre-Mir-338-P2b Ebu-Mir-338-o2 Ete-Mir-338-P2 Ete-Mir-338-P2-as Gga-Mir-338-P2 Gja-Mir-338-P2 Gmo-Mir-338-P2a Gmo-Mir-338-P2b Hsa-Mir-338-P2 Hsa-Mir-338-P2-as Lch-Mir-338-P2 Loc-Mir-338-P2 Mal-Mir-338-P2a Mal-Mir-338-P2b Mdo-Mir-338-P2 Mml-Mir-338-P2 Mml-Mir-338-P2-as Mmu-Mir-338-P2 Mmu-Mir-338-P2-as Mun-Mir-338-P2e Mun-Mir-338-P2f Oan-Mir-338-P2 Ocu-Mir-338-P2 Pbv-Mir-338-P2 Rno-Mir-338-P2 Rno-Mir-338-P2-as Sha-Mir-338-P2 Spt-Mir-338-P2 Sto-Mir-338-P2 Tgu-Mir-338-P2 Tgu-Mir-338-P2-as Tni-Mir-338-P2a Tni-Mir-338-P2b Xla-Mir-338-P2c Xla-Mir-338-P2d Xtr-Mir-338-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(dasNov3)

JH565942: 225934-225994 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGCGGCCCCGCCAGCCGGGCCGUCCUCCUCGACAACAUCCUGGUGCUGCCGAGUGAUGGCACAGCGACUCCAGCAUCAGUGAUUUUGUUGAAGAGGGCGGCCCCCAGCCUCCCGCCCGCCC

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Structure

        10          20        30         40        50        60
CGCGGCCCCGCCAGCCG--          C       C   -|        CC  GUGAUGG 
                   GGCCGUCCUC UCGACAA AUC CUGGUGCUG  GA       C
                   CCGGCGGGAG AGUUGUU UAG GACUACGAC  CU       A
CCCGCCCGCCCUCCGACCC          A       U   U^        --  CAGCGAC 
 .       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Dno-Mir-338-P2_5p* (predicted)

mirBase accession

MIMAT0047819

Sequence

0- GACAACAUCCUGGUGCUGCCGA -22

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Mature sequence

Dno-Mir-338-P2_3p

mirBase accession

MIMAT0047820

Sequence

38- UCCAGCAUCAGUGAUUUUGUUGA -61

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