MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-338-P2

Family name MIR-338 (all species)
Seed CCAGCAU
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-338
Paralogues
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cja-Mir-338-P2  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Dre-Mir-338-P2b  Ebu-Mir-338-o2  Eca-Mir-338-P2  Eca-Mir-338-P2-as  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Laf-Mir-338-P2  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmr-Mir-338-P2  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Mun-Mir-338-P2e  Mun-Mir-338-P2f  Neu-Mir-338-P2  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pab-Mir-338-P2  Pab-Mir-338-P2-as  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Tni-Mir-338-P2b  Xla-Mir-338-P2c  Xla-Mir-338-P2d  Xtr-Mir-338-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)		 GL856847.1: 53467-53527 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACCACUGCUCAUCUUGGCUUUCCUCCCCAACAAUAUCCUGAUGCUGAGUGAGCGGCACAUAGAGACUCCAGCAUCAGUGAUUUUGUUGAAGAGGGUGGCUGCCGGCUUCUUCCUGACCU
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Structure
        10          20        30         40         50         
CCACCACUGCUCAUCUU--    U     CC      U   -        -|   GAGCGGC 
                   GGCU UCCUC  CAACAA AUC CUGAUGCU GAGU       \
                   UCGG GGGAG  GUUGUU UAG GACUACGA CUCA       A
UCCAGUCCUUCUUCGGCCG    U     AA      U   U        C^   GAGAUAC 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-338-P2_5p*
mirBase accessionNone
Sequence 
0- AACAAUAUCCUGAUGCUGAGU -21
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Mature sequence

Sha-Mir-338-P2_3p
mirBase accessionMIMAT0022818
Sequence 
38- UCCAGCAUCAGUGAUUUUGUUGA -61
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