Mir-338-P2c

MirGeneDB ID

Xla-Mir-338-P2c

Family name

MIR-338 (all species)

Seed

ACAAUAU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-338-P1a Xla-Mir-338-P1b Xla-Mir-338-P2d

Orthologues

Aca-Mir-338-P2 Ami-Mir-338-P2 Bta-Mir-338-P2 Bta-Mir-338-P2-as Cfa-Mir-338-P2 Cfa-Mir-338-P2-as Cja-Mir-338-P2 Cli-Mir-338-P2 Cmi-Mir-338-P2 Cpi-Mir-338-P2 Cpi-Mir-338-P2-as Cpo-Mir-338-P2 Dno-Mir-338-P2 Ebu-Mir-338-o2 Eca-Mir-338-P2 Eca-Mir-338-P2-as Ete-Mir-338-P2 Ete-Mir-338-P2-as Gga-Mir-338-P2 Gja-Mir-338-P2 Hsa-Mir-338-P2 Hsa-Mir-338-P2-as Laf-Mir-338-P2 Lch-Mir-338-P2 Loc-Mir-338-P2 Mdo-Mir-338-P2 Mml-Mir-338-P2 Mml-Mir-338-P2-as Mmr-Mir-338-P2 Mmu-Mir-338-P2 Mmu-Mir-338-P2-as Neu-Mir-338-P2 Oan-Mir-338-P2 Ocu-Mir-338-P2 Pab-Mir-338-P2 Pab-Mir-338-P2-as Pbv-Mir-338-P2 Rno-Mir-338-P2 Rno-Mir-338-P2-as Sha-Mir-338-P2 Spt-Mir-338-P2 Sto-Mir-338-P2 Tgu-Mir-338-P2 Tgu-Mir-338-P2-as Xtr-Mir-338-P2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030740.1: 22348510-22348570 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUGGACGCGUCUUUCAGUUUGUCUCCUGGAACAAUAUCCUGAUGCUGAAUGAGUGGGACAUACAGGCUCCAGCAUCAGUGAUUUUGUUGCAGGCGGCACACAUUGCUUCUGGUCCAUUGG

Get precursor sequence

Structure

        10          20        30         40        50         
CCUGGACGCGUCUUUCA--  U    U    G     U   -|        AAUGAGUGGG 
                   GU UGUC CCUG AACAA AUC CUGAUGCUG          A
                   CA ACGG GGAC UUGUU UAG GACUACGAC          C
GGUUACCUGGUCUUCGUUA  C    C    G     U   U^        CUCGGACAUA 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-338-P2c_5p

mirBase accession

None

Sequence

0- AACAAUAUCCUGAUGCUGAAUG -22

Get sequence

Co-mature sequence

Xla-Mir-338-P2c_3p

mirBase accession

None

Sequence

38- UCCAGCAUCAGUGAUUUUGUUGC -61

Get sequence