MirGeneDB 3.0
MirGeneDB ID

Ete-Mir-338-P2-as

Family name MIR-338 (all species)
Seed CAACAAA
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues Ete-Mir-338-P2 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cja-Mir-338-P2  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Dre-Mir-338-P2b  Ebu-Mir-338-o2  Eca-Mir-338-P2  Eca-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Laf-Mir-338-P2  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmr-Mir-338-P2  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Mun-Mir-338-P2e  Mun-Mir-338-P2f  Neu-Mir-338-P2  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pab-Mir-338-P2  Pab-Mir-338-P2-as  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Tni-Mir-338-P2b  Xla-Mir-338-P2c  Xla-Mir-338-P2d  Xtr-Mir-338-P2 
Node of Origin (locus) Amniota
Node of Origin (family) Vertebrata
Genome context
(echTel2)		 manual_Ete-Mir-338-P1: 31-91 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GGCGGCGGCGGAGGCUGGCAGCUGCCCUCUUCAACAAAAUCACUGAUGCUGGAGUCGCCUUGUCACCACUCAGCACCAGGAUAUUGUUGGGGAGGACGGCCCGUGCGGCGUCCGGGCUGGG
Get precursor sequence
Structure
        10        20         30        40        50        60 
GGCGGCGGCGGAGGCUGGCA-|   C            A   A   A     G  UCGCCU 
                     GCUG CCUCUUCAACAA AUC CUG UGCUG AG      U
                     CGGC GGAGGGGUUGUU UAG GAC ACGAC UC      G
GGGUCGGGCCUGCGGCGUGCC^   A            A   -   C     -  ACCACU 
 .       110       100        90        80          70
Deep sequencing
Go to detailed chart
CommentNot in assembly but in trace archive.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ete-Mir-338-P2-as_5p
mirBase accessionNone
Sequence 
0- UCAACAAAAUCACUGAUGCUGGAG -24
Get sequence
Star sequence

Ete-Mir-338-P2-as_3p*
mirBase accessionNone
Sequence 
39- UCAGCACCAGGAUAUUGUUGGG -61
Get sequence