Mir-338-P2-as

MirGeneDB ID

Rno-Mir-338-P2-as

Family name

MIR-338 (all species)

Seed

CAACAAA

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-3065

Paralogues

Rno-Mir-338-P2

Orthologues

Aca-Mir-338-P2 Ami-Mir-338-P2 Bta-Mir-338-P2 Bta-Mir-338-P2-as Cfa-Mir-338-P2 Cfa-Mir-338-P2-as Cja-Mir-338-P2 Cli-Mir-338-P2 Cmi-Mir-338-P2 Cpi-Mir-338-P2 Cpi-Mir-338-P2-as Cpo-Mir-338-P2 Dno-Mir-338-P2 Dre-Mir-338-P2a Dre-Mir-338-P2b Ebu-Mir-338-o2 Eca-Mir-338-P2 Eca-Mir-338-P2-as Ete-Mir-338-P2 Ete-Mir-338-P2-as Gga-Mir-338-P2 Gja-Mir-338-P2 Gmo-Mir-338-P2a Gmo-Mir-338-P2b Hsa-Mir-338-P2 Hsa-Mir-338-P2-as Laf-Mir-338-P2 Lch-Mir-338-P2 Loc-Mir-338-P2 Mal-Mir-338-P2a Mal-Mir-338-P2b Mdo-Mir-338-P2 Mml-Mir-338-P2 Mml-Mir-338-P2-as Mmr-Mir-338-P2 Mmu-Mir-338-P2 Mmu-Mir-338-P2-as Mun-Mir-338-P2e Mun-Mir-338-P2f Neu-Mir-338-P2 Oan-Mir-338-P2 Ocu-Mir-338-P2 Pab-Mir-338-P2 Pab-Mir-338-P2-as Pbv-Mir-338-P2 Sha-Mir-338-P2 Spt-Mir-338-P2 Sto-Mir-338-P2 Tgu-Mir-338-P2 Tgu-Mir-338-P2-as Tni-Mir-338-P2a Tni-Mir-338-P2b Xla-Mir-338-P2c Xla-Mir-338-P2d Xtr-Mir-338-P2

Node of Origin (locus)

Amniota

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr10: 109195254-109195316 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-338-P2-as)

Mir-338-P2 chr10: 109195254-109195311 [-] UCSC Ensembl
Mir-338-P2-as chr10: 109195254-109195316 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGCAGGACAGGAGGCUGGCAGCUGCCCUCUUCAACAAAAUCACUGAUGCUGGAGUCACUGUGCACCCACUCAGCACCAGGAUAUUGUUGGGGAGGACGGCCUGGGCAGCGUCGGGGCUGGCGG

Get precursor sequence

Structure

        10          20         30        40        50        60 
GGCAGGACAGGAGGCUGG--  -|   C            A   A   A     G   CACUG 
                    CA GCUG CCUCUUCAACAA AUC CUG UGCUG AGU     U
                    GU CGGC GGAGGGGUUGUU UAG GAC ACGAC UCA     G
GGCGGUCGGGGCUGCGACGG  C^   A            A   -   C     -   CCCAC 
 120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-338-P2-as_5p

mirBase accession

MIMAT0017839

Sequence

0- UCAACAAAAUCACUGAUGCUGGAGU -25

Get sequence

Proposed targets

TargetScanVert: rno-miR-3065-5p
miRDB: MIMAT0017839

Star sequence

Rno-Mir-338-P2-as_3p*

mirBase accession

MIMAT0017840

Sequence

39- UCAGCACCAGGAUAUUGUUGGGGA -63

Get sequence

Proposed targets

TargetScanVert: rno-miR-3065-3p
miRDB: MIMAT0017840