MirGeneDB 3.0
MirGeneDB ID

Mun-Mir-338-P2e

Family name MIR-338 (all species)
Seed CCAGCAU
Species Microcaecilia (Microcaecilia unicolor)
MiRBase ID
Paralogues Mun-Mir-338-P1  Mun-Mir-338-P2f 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cja-Mir-338-P2  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Ebu-Mir-338-o2  Eca-Mir-338-P2  Eca-Mir-338-P2-as  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Laf-Mir-338-P2  Lch-Mir-338-P2  Loc-Mir-338-P2  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmr-Mir-338-P2  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Neu-Mir-338-P2  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pab-Mir-338-P2  Pab-Mir-338-P2-as  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Xtr-Mir-338-P2 
Node of Origin (locus) M. unicolor
Node of Origin (family) Vertebrata
Genome context
(Mun_miRNA_loci)		 338-P2c_LR594637.1:340963719-340963979: 101-161 [+]
Precursor
(pre-Mir +30nt flank)
UUCCUUGCAACUGUCUUGGUCAUGGUCUGUAACAAUAUCCUGAUGCUGACUGAGUGGGCUUUGCAGACUCCAGCAUCAGUGAUUUUGUUGUAGAGGGUGAUCUGUGGCUUCAGUUUCUCUA
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Structure
        10          20        30         40        50         
UUCCUUGCAACUGUCUU--      GG          U   -|        ACUGAGUGGG 
                   GGUCAU  UCUGUAACAA AUC CUGAUGCUG          C
                   CUAGUG  AGAUGUUGUU UAG GACUACGAC          U
AUCUCUUUGACUUCGGUGU      GG          U   U^        CUCAGACGUU 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Mun-Mir-338-P2e_5p*
mirBase accessionNone
Sequence 
0- AACAAUAUCCUGAUGCUGACU -21
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Mature sequence

Mun-Mir-338-P2e_3p
mirBase accessionNone
Sequence 
38- UCCAGCAUCAGUGAUUUUGUUGU -61
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