Mir-338-P2-as

MirGeneDB ID

Mmu-Mir-338-P2-as

Family name

MIR-338 (all species)

Seed

CAACAAA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-3065

Paralogues

Mmu-Mir-338-P2

Orthologues

Aca-Mir-338-P2 Ami-Mir-338-P2 Bta-Mir-338-P2 Bta-Mir-338-P2-as Cfa-Mir-338-P2 Cfa-Mir-338-P2-as Cli-Mir-338-P2 Cmi-Mir-338-P2 Cpi-Mir-338-P2 Cpi-Mir-338-P2-as Cpo-Mir-338-P2 Dno-Mir-338-P2 Dre-Mir-338-P2a Dre-Mir-338-P2b Ebu-Mir-338-o2 Ete-Mir-338-P2 Ete-Mir-338-P2-as Gga-Mir-338-P2 Gja-Mir-338-P2 Gmo-Mir-338-P2a Gmo-Mir-338-P2b Hsa-Mir-338-P2 Hsa-Mir-338-P2-as Lch-Mir-338-P2 Loc-Mir-338-P2 Mal-Mir-338-P2a Mal-Mir-338-P2b Mdo-Mir-338-P2 Mml-Mir-338-P2 Mml-Mir-338-P2-as Mun-Mir-338-P2e Mun-Mir-338-P2f Oan-Mir-338-P2 Ocu-Mir-338-P2 Pbv-Mir-338-P2 Rno-Mir-338-P2 Rno-Mir-338-P2-as Sha-Mir-338-P2 Spt-Mir-338-P2 Sto-Mir-338-P2 Tgu-Mir-338-P2 Tgu-Mir-338-P2-as Tni-Mir-338-P2a Tni-Mir-338-P2b Xla-Mir-338-P2c Xla-Mir-338-P2d Xtr-Mir-338-P2

Node of Origin (locus)

Amniota

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr11: 120014780-120014841 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-338-P2-as)

Mir-338-P2 chr11: 120014780-120014837 [-] UCSC Ensembl
Mir-338-P2-as chr11: 120014780-120014841 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGCAGGGCAGGAGGCUGGCAGCUGCCCUCUUCAACAAAAUCACUGAUGCUGGAGUCACUGUGCACCCACUCAGCACCAGGAUAUUGUUGGGGAGGACGGCCUGUGCAGCGUUGGAGCUGGUG

Get precursor sequence

Structure

        10         20         30        40        50        60 
GGCAGGGCAGGAGGCUG-   -|   C            A   A   A     G   CACUG 
                  GCA GCUG CCUCUUCAACAA AUC CUG UGCUG AGU     U
                  UGU CGGC GGAGGGGUUGUU UAG GAC ACGAC UCA     G
GUGGUCGAGGUUGCGACG   C^   A            A   -   C     -   CCCAC 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

Tissue expression

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Mature sequence

Mmu-Mir-338-P2-as_5p

mirBase accession

MIMAT0014836

Sequence

0- UCAACAAAAUCACUGAUGCUGGAGU -25

Get sequence

Proposed targets

TargetScanVert: mmu-miR-3065-5p
miRDB: MIMAT0014836

Star sequence

Mmu-Mir-338-P2-as_3p*

mirBase accession

MIMAT0014837

Sequence

39- UCAGCACCAGGAUAUUGUUGGGG -62

Get sequence

Proposed targets

TargetScanVert: mmu-miR-3065-3p
miRDB: MIMAT0014837