MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-338-P2a

Family name MIR-338 (all species)
Seed CCAGCAU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-338-3
Paralogues Dre-Mir-338-P1  Dre-Mir-338-P2b 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cja-Mir-338-P2  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Ebu-Mir-338-o2  Eca-Mir-338-P2  Eca-Mir-338-P2-as  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Laf-Mir-338-P2  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmr-Mir-338-P2  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Neu-Mir-338-P2  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pab-Mir-338-P2  Pab-Mir-338-P2-as  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Xtr-Mir-338-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr3: 51907489-51907549 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCGGAUGUCCGGCUCUGGUGUCUCCUGGCAACAAUAUCCUGGUGCUGCCUGAGUACAUCUCACAGACUCCAGCAUCAGUGAUUUUGUUGCCGGGGGAAAACCCCUCACUCUACAAACACC
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Structure
        10         20         30         40        50        60 
CCCGGAUGUCCGGCUCU-   G-              U   -|        CCU    ACAUC 
                  GGU  UCUCCUGGCAACAA AUC CUGGUGCUG   GAGU     \
                  CCA  AGGGGGCCGUUGUU UAG GACUACGAC   CUCA     U
CCACAAACAUCUCACUCC   AA              U   U^        ---    GACAC 
 .       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-338-P2a_5p*
mirBase accessionMIMAT0048672
Sequence 
0- AACAAUAUCCUGGUGCUGCCUGAGU -25
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Mature sequence

Dre-Mir-338-P2a_3p
mirBase accessionMIMAT0048673
Sequence 
38- UCCAGCAUCAGUGAUUUUGUUGC -61
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