MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-338-P2

Family name MIR-338 (all species)
Seed CCAGCAU
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-338-P1 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cja-Mir-338-P2  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Dre-Mir-338-P2b  Ebu-Mir-338-o2  Eca-Mir-338-P2  Eca-Mir-338-P2-as  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Laf-Mir-338-P2  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmr-Mir-338-P2  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Mun-Mir-338-P2e  Mun-Mir-338-P2f  Neu-Mir-338-P2  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pab-Mir-338-P2  Pab-Mir-338-P2-as  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Tni-Mir-338-P2b  Xla-Mir-338-P2c  Xla-Mir-338-P2d  Xtr-Mir-338-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01011895.1: 45596-45655 [+]
Precursor
(pre-Mir +30nt flank)
CGGAGACCGUCGUCGCUGUUCAUUCCCUGCAACAAUAUCCUGAUGCUGACAGAGUGAACCUGGCGACUCCAGCAUCAGUGAUUUUGUUGCGGAGGGUGAUCACUCACUGCUUUGCAAUGG
Get precursor sequence
Structure
        10          20        30         40        50         
CGGAGACCGUCGUCGCU-- U      C         U   -|        ACAGAGUGAA 
                   G UCAUUC CUGCAACAA AUC CUGAUGCUG          \
                   C AGUGGG GGCGUUGUU UAG GACUACGAC          C
GGUAACGUUUCGUCACUCA U      A         U   U^        CUCAGCGGUC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Sto-Mir-338-P2_5p* (predicted)
mirBase accessionNone
Sequence 
0- AACAAUAUCCUGAUGCUGACAG -22
Get sequence
Mature sequence

Sto-Mir-338-P2_3p
mirBase accessionNone
Sequence 
37- UCCAGCAUCAGUGAUUUUGUUGC -60
Get sequence