MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-338-P1

Family name MIR-338 (all species)
Seed CCAGCAU
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-338-P2 
Orthologues Ami-Mir-338-P1  Cli-Mir-338-P1  Cmi-Mir-338-P1  Cpi-Mir-338-P1  Dre-Mir-338-P1  Ebu-Mir-338-o1  Gmo-Mir-338-P1  Lch-Mir-338-P1  Loc-Mir-338-P1  Mal-Mir-338-P1  Mun-Mir-338-P1  Tgu-Mir-338-P1  Tni-Mir-338-P1  Xla-Mir-338-P1a  Xla-Mir-338-P1b  Xtr-Mir-338-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01002757.1: 145388-145447 [-]
Precursor
(pre-Mir +30nt flank)
GGGUUGUCGGAAGAAGUGUUCAUUUCUGGCAACAAUAUCCUGCUGCUGUCUGAGUAUGUGGAAAAGCUCCAGCAUCAGUGAUUUUGUUGCUGGUGGUGAAUCAAAGCAGCUAAACGUUUU
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Structure
        10          20        30         40        50        60
GGGUUGUCGGAAGAAGU--      UU UG       U   -|  C     UCU    AUGU 
                   GUUCAU  C  GCAACAA AUC CUG UGCUG   GAGU    G
                   UAAGUG  G  CGUUGUU UAG GAC ACGAC   CUCG    G
UUUUGCAAAUCGACGAAAC      GU GU       U   U^  U     ---    AAAA 
.       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Sto-Mir-338-P1_5p*
mirBase accessionNone
Sequence 
0- AACAAUAUCCUGCUGCUGUCUGAGU -25
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Mature sequence

Sto-Mir-338-P1_3p
mirBase accessionNone
Sequence 
37- UCCAGCAUCAGUGAUUUUGUUGC -60
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