MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-338-P1

Family name MIR-338 (all species)
Seed CCAGCAU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-338-2
Paralogues Gmo-Mir-338-P2a  Gmo-Mir-338-P2b 
Orthologues Ami-Mir-338-P1  Cli-Mir-338-P1  Cmi-Mir-338-P1  Cpi-Mir-338-P1  Dre-Mir-338-P1  Ebu-Mir-338-o1  Lch-Mir-338-P1  Loc-Mir-338-P1  Mal-Mir-338-P1  Mun-Mir-338-P1  Sto-Mir-338-P1  Tgu-Mir-338-P1  Tni-Mir-338-P1  Xla-Mir-338-P1a  Xla-Mir-338-P1b  Xtr-Mir-338-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_1790: 294559-294620 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAGCAGGGUGCAACGUGCCUCCCCGGGGGAACAACAUCCUGGUGCUGCCCGGGUGUGUGCAGCAGAACUCCAGCAUCAGUGAUUUUGUUGCCUUGGGGAGUGCGAUCUCAGCGGACGUUCU
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Structure
        10          20        30         40        50        60 
ACAGCAGGGUGCAACGU-  -          G     C   -|        CCC    GUGUG 
                  GC CUCCCCGGGG AACAA AUC CUGGUGCUG   GGGU     C
                  CG GAGGGGUUCC UUGUU UAG GACUACGAC   CUCA     A
UCUUGCAGGCGACUCUAG  U          G     U   U^        ---    AGACG 
120       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-338-P1_5p*
mirBase accessionMIMAT0044152
Sequence 
0- AACAACAUCCUGGUGCUGCCCGGGU -25
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Mature sequence

Gmo-Mir-338-P1_3p
mirBase accessionMIMAT0044153
Sequence 
39- UCCAGCAUCAGUGAUUUUGUUGC -62
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