MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-338-P1

Family name MIR-338 (all species)
Seed CCAGCAU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-338-2
Paralogues Xtr-Mir-338-P2 
Orthologues Ami-Mir-338-P1  Cli-Mir-338-P1  Cmi-Mir-338-P1  Cpi-Mir-338-P1  Dre-Mir-338-P1  Ebu-Mir-338-o1  Gmo-Mir-338-P1  Lch-Mir-338-P1  Loc-Mir-338-P1  Mal-Mir-338-P1  Mun-Mir-338-P1  Sto-Mir-338-P1  Tgu-Mir-338-P1  Tni-Mir-338-P1  Xla-Mir-338-P1a  Xla-Mir-338-P1b 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr9: 20077940-20077999 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACUGAGAGGCCAUGUGUUUACUUCUGGCAACAAUAUCCUGAUGCCGUCUGAGUGUGCGGGAAAGCUCCAGCAUCAGUGAUUUUGUUGGUGGUGGUAAAUAAAAAGCAUCUUAGACUCU
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Structure
        10          20        30         40        50        60
CCACUGAGAGGCCAUGU--       U   G      U   -|      CGUCU    GUGC 
                   GUUUACU CUG CAACAA AUC CUGAUGC     GAGU    G
                   UAAAUGG GGU GUUGUU UAG GACUACG     CUCG    G
UCUCAGAUUCUACGAAAAA       U   G      U   U^      AC---    AAAG 
.       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
An Br Em Em He Ve
Star sequence

Xtr-Mir-338-P1_5p*
mirBase accessionNone
Sequence 
0- AACAAUAUCCUGAUGCCGUCUGAGU -25
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Mature sequence

Xtr-Mir-338-P1_3p
mirBase accessionMIMAT0003665
Sequence 
37- UCCAGCAUCAGUGAUUUUGUUGG -60
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Proposed targets TargetScanVert: xtr-miR-338