MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-338-P1

Family name MIR-338 (all species)
Seed CCAGCAU
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-338-P2a  Mal-Mir-338-P2b 
Orthologues Ami-Mir-338-P1  Cli-Mir-338-P1  Cmi-Mir-338-P1  Cpi-Mir-338-P1  Dre-Mir-338-P1  Ebu-Mir-338-o1  Gmo-Mir-338-P1  Lch-Mir-338-P1  Loc-Mir-338-P1  Mun-Mir-338-P1  Sto-Mir-338-P1  Tgu-Mir-338-P1  Tni-Mir-338-P1  Xla-Mir-338-P1a  Xla-Mir-338-P1b  Xtr-Mir-338-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884859.1: 383307-383368 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUUGCAUGGUGAUGCUGUUGCCUCCUGGGAACAAUAUCAGGAUGCUGUCUGGGUGUGUAAAGCAGAACUCCAGCAUCAGUGAUUUUGUUGCCAGGGGGAGGACUAUAACAGCAGGUCCUUC
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Structure
        10         20         30        40         50        60 
GUUUGCAUGGUGAUGCU-   G-        G     U    G-|      UCU    GUGUA 
                  GUU  CCUCCUGG AACAA AUCA  GAUGCUG   GGGU     A
                  CAG  GGGGGACC UUGUU UAGU  CUACGAC   CUCA     A
CUUCCUGGACGACAAUAU   GA        G     U    GA^      ---    AGACG 
120       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-338-P1_5p*
mirBase accessionNone
Sequence 
0- AACAAUAUCAGGAUGCUGUCUGGGU -25
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Mature sequence

Mal-Mir-338-P1_3p
mirBase accessionNone
Sequence 
39- UCCAGCAUCAGUGAUUUUGUUGC -62
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