MirGeneDB 2.1

MirGeneDB ID

Mal-Mir-338-P2a

Family name MIR-338 (all species)
Seed CCAGCAU
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-338-P1  Mal-Mir-338-P2b 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Ebu-Mir-338-o2  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Lch-Mir-338-P2  Loc-Mir-338-P2  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Xtr-Mir-338-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)
KV885038.1: 28318-28378 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGUGUGCCUCCUUCUGGUCUCUCCCAGCAACAACAUCCUGGUGCUGCCUGAGUAGUUGUCACAAACUCCAGCAUCAGUGAUUUUGUUGCCGGGGGUGAGCCCCUCUCGCUCUCUUUUAG
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Structure
        10          20        30         40        50        60 
UUUGUGUGCCUCCUUCU-  -  U     A       C   -|        CCU    AGUUG 
                  GG UC CUCCC GCAACAA AUC CUGGUGCUG   GAGU     \
                  CC AG GGGGG CGUUGUU UAG GACUACGAC   CUCA     U
GAUUUUCUCUCGCUCUCC  G  U     C       U   U^        ---    AACAC 
 .       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-338-P2a_5p*

mirBase accessionNone
Sequence
0- AACAACAUCCUGGUGCUGCCUGAGU -25
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Mature sequence

Mal-Mir-338-P2a_3p

mirBase accessionNone
Sequence
38- UCCAGCAUCAGUGAUUUUGUUGC -61
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