MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-338-P2b

Family name MIR-338 (all species)
Seed CCAGCAU
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-338-P1  Mal-Mir-338-P2a 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cja-Mir-338-P2  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2b  Ebu-Mir-338-o2  Eca-Mir-338-P2  Eca-Mir-338-P2-as  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Laf-Mir-338-P2  Lch-Mir-338-P2  Loc-Mir-338-P2  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmr-Mir-338-P2  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Neu-Mir-338-P2  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pab-Mir-338-P2  Pab-Mir-338-P2-as  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2b  Xtr-Mir-338-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884755.1: 1797539-1797599 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCUCCUCUGGCUUCUUCGUUGCUUCCUGGAACAAUAUCCUGGUGCUGCUCGAGUGCUCCAUACAGACUCCAGCAUCAGUGAUUUUGUUGCAGGCGGCCACUCCUCAUCUCCAGAAAUAUG
Get precursor sequence
Structure
        10          20        30         40        50        60 
UCCUCCUCUGGCUUCUUC--  U   U    G     U   -|        CUC    GCUCC 
                    GU GCU CCUG AACAA AUC CUGGUGCUG   GAGU     \
                    CA CGG GGAC UUGUU UAG GACUACGAC   CUCA     A
GUAUAAAGACCUCUACUCCU  C   C    G     U   U^        ---    GACAU 
 .       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-338-P2b_5p*
mirBase accessionNone
Sequence 
0- AACAAUAUCCUGGUGCUGCUCGAGU -25
Get sequence
Mature sequence

Mal-Mir-338-P2b_3p
mirBase accessionNone
Sequence 
38- UCCAGCAUCAGUGAUUUUGUUGC -61
Get sequence