MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-338-P2b

Family name MIR-338 (all species)
Seed CCAGCAU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-338-1
Paralogues Dre-Mir-338-P1  Dre-Mir-338-P2a 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Ebu-Mir-338-o2  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2b  Xtr-Mir-338-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr12: 35710532-35710592 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGAUUUUCUGUCUCAAGGUUUCUCCCUGCAACAAUCUCCUGAUGCUGCCUGAGUGUUUUUCUUCCACUCCAGCAUCAGUGAUUUUGUUGCCGGAGGUCACCACACAUCUUCCAGCUACUU
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Structure
        10          20         30         40        50        60 
CCGAUUUUCUGUCUCAA--   U-|    CU       UC  -         CCU    GUUUU 
                   GGU  UCUCC  GCAACAA  UC CUGAUGCUG   GAGU     \
                   CCA  GGAGG  CGUUGUU  AG GACUACGAC   CUCA     U
UUCAUCGACCUUCUACACA   CU^    C-       UU  U         ---    CCUUC 
 .       110       100         90        80           70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-338-P2b_5p*

mirBase accessionNone
Sequence
0- AACAAUCUCCUGAUGCUGCCUGAGU -25
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Mature sequence

Dre-Mir-338-P2b_3p

mirBase accessionMIMAT0001873
Sequence
38- UCCAGCAUCAGUGAUUUUGUUGC -61
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Proposed targets TargetScanFish: dre-miR-338