| MirGeneDB ID | Dre-Mir-338-P2b |
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| Family name |
MIR-338 (all species) |
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| Seed |
CCAGCAU |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
dre-mir-338-1
|
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| Paralogues |
Dre-Mir-338-P1
Dre-Mir-338-P2a
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| Orthologues |
Aca-Mir-338-P2
Ami-Mir-338-P2
Bta-Mir-338-P2
Bta-Mir-338-P2-as
Cfa-Mir-338-P2
Cfa-Mir-338-P2-as
Cja-Mir-338-P2
Cli-Mir-338-P2
Cmi-Mir-338-P2
Cpi-Mir-338-P2
Cpi-Mir-338-P2-as
Cpo-Mir-338-P2
Dno-Mir-338-P2
Ebu-Mir-338-o2
Eca-Mir-338-P2
Eca-Mir-338-P2-as
Ete-Mir-338-P2
Ete-Mir-338-P2-as
Gga-Mir-338-P2
Gja-Mir-338-P2
Gmo-Mir-338-P2b
Hsa-Mir-338-P2
Hsa-Mir-338-P2-as
Laf-Mir-338-P2
Lch-Mir-338-P2
Loc-Mir-338-P2
Mal-Mir-338-P2b
Mdo-Mir-338-P2
Mml-Mir-338-P2
Mml-Mir-338-P2-as
Mmr-Mir-338-P2
Mmu-Mir-338-P2
Mmu-Mir-338-P2-as
Neu-Mir-338-P2
Oan-Mir-338-P2
Ocu-Mir-338-P2
Pab-Mir-338-P2
Pab-Mir-338-P2-as
Pbv-Mir-338-P2
Rno-Mir-338-P2
Rno-Mir-338-P2-as
Sha-Mir-338-P2
Spt-Mir-338-P2
Sto-Mir-338-P2
Tgu-Mir-338-P2
Tgu-Mir-338-P2-as
Tni-Mir-338-P2b
Xtr-Mir-338-P2
|
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(danRer11) |
chr12: 35710532-35710592 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CCGAUUUUCUGUCUCAAGGUUUCUCCCUGCAACAAUCUCCUGAUGCUGCCUGAGUGUUUUUCUUCCACUCCAGCAUCAGUGAUUUUGUUGCCGGAGGUCACCACACAUCUUCCAGCUACUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CCGAUUUUCUGUCUCAA-- U-| CU UC - CCU GUUUU
GGU UCUCC GCAACAA UC CUGAUGCUG GAGU \
CCA GGAGG CGUUGUU AG GACUACGAC CUCA U
UUCAUCGACCUUCUACACA CU^ C- UU U --- CCUUC
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Star sequence |
Dre-Mir-338-P2b_5p* |
| mirBase accession | None |
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| Sequence |
0- AACAAUCUCCUGAUGCUGCCUGAGU -25
Get sequence
|
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| Mature sequence |
Dre-Mir-338-P2b_3p |
| mirBase accession | MIMAT0001873 |
|---|
| Sequence |
38- UCCAGCAUCAGUGAUUUUGUUGC -61
Get sequence
|
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| Proposed targets |
TargetScanFish: dre-miR-338
|
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