Mir-338-P2b

MirGeneDB ID

Tni-Mir-338-P2b

Family name

MIR-338 (all species)

Seed

CCAGCAU

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-338-P1 Tni-Mir-338-P2a

Orthologues

Aca-Mir-338-P2 Ami-Mir-338-P2 Bta-Mir-338-P2 Bta-Mir-338-P2-as Cfa-Mir-338-P2 Cfa-Mir-338-P2-as Cja-Mir-338-P2 Cli-Mir-338-P2 Cmi-Mir-338-P2 Cpi-Mir-338-P2 Cpi-Mir-338-P2-as Cpo-Mir-338-P2 Dno-Mir-338-P2 Dre-Mir-338-P2b Ebu-Mir-338-o2 Eca-Mir-338-P2 Eca-Mir-338-P2-as Ete-Mir-338-P2 Ete-Mir-338-P2-as Gga-Mir-338-P2 Gja-Mir-338-P2 Gmo-Mir-338-P2b Hsa-Mir-338-P2 Hsa-Mir-338-P2-as Laf-Mir-338-P2 Lch-Mir-338-P2 Loc-Mir-338-P2 Mal-Mir-338-P2b Mdo-Mir-338-P2 Mml-Mir-338-P2 Mml-Mir-338-P2-as Mmr-Mir-338-P2 Mmu-Mir-338-P2 Mmu-Mir-338-P2-as Neu-Mir-338-P2 Oan-Mir-338-P2 Ocu-Mir-338-P2 Pab-Mir-338-P2 Pab-Mir-338-P2-as Pbv-Mir-338-P2 Rno-Mir-338-P2 Rno-Mir-338-P2-as Sha-Mir-338-P2 Spt-Mir-338-P2 Sto-Mir-338-P2 Tgu-Mir-338-P2 Tgu-Mir-338-P2-as Xtr-Mir-338-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

2: 2385304-2385364 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGCCCUCUUCCUUCGUUGGUCACUUCCUGGAACAAUAUCCUGGUGCUGCUCGAGUGUUCCCUACAGACUCCAGCAUCAGUGAUUUUGUUGCAGGCGCUGAUCCUCCGUCUGCAGAAUUCCA

Get precursor sequence

Structure

        10          20        30         40          50        
CGCCCUCUUCCUUCGUU--     CUU    G     U   -         C--| GAGUGU 
                   GGUCA   CCUG AACAA AUC CUGGUGCUG   UC      U
                   CUAGU   GGAC UUGUU UAG GACUACGAC   AG      C
ACCUUAAGACGUCUGCCUC     CGC    G     U   U         CUC^ ACAUCC 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-338-P2b_5p*

mirBase accession

None

Sequence

0- AACAAUAUCCUGGUGCUGCUCG -22

Get sequence

Mature sequence

Tni-Mir-338-P2b_3p

mirBase accession

None

Sequence

38- UCCAGCAUCAGUGAUUUUGUUGC -61

Get sequence