Mir-338-P2-as

MirGeneDB ID	Pab-Mir-338-P2-as
Family name	MIR-338 (all species)
Seed	CAACAAA
Species	Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues	Pab-Mir-338-P2
Orthologues	Aca-Mir-338-P2 Ami-Mir-338-P2 Bta-Mir-338-P2 Bta-Mir-338-P2-as Cfa-Mir-338-P2 Cfa-Mir-338-P2-as Cja-Mir-338-P2 Cli-Mir-338-P2 Cmi-Mir-338-P2 Cpi-Mir-338-P2 Cpi-Mir-338-P2-as Cpo-Mir-338-P2 Dno-Mir-338-P2 Dre-Mir-338-P2a Dre-Mir-338-P2b Ebu-Mir-338-o2 Eca-Mir-338-P2 Eca-Mir-338-P2-as Ete-Mir-338-P2 Ete-Mir-338-P2-as Gga-Mir-338-P2 Gja-Mir-338-P2 Gmo-Mir-338-P2a Gmo-Mir-338-P2b Hsa-Mir-338-P2 Hsa-Mir-338-P2-as Laf-Mir-338-P2 Lch-Mir-338-P2 Loc-Mir-338-P2 Mal-Mir-338-P2a Mal-Mir-338-P2b Mdo-Mir-338-P2 Mml-Mir-338-P2 Mml-Mir-338-P2-as Mmr-Mir-338-P2 Mmu-Mir-338-P2 Mmu-Mir-338-P2-as Mun-Mir-338-P2e Mun-Mir-338-P2f Neu-Mir-338-P2 Oan-Mir-338-P2 Ocu-Mir-338-P2 Pbv-Mir-338-P2 Rno-Mir-338-P2 Rno-Mir-338-P2-as Sha-Mir-338-P2 Spt-Mir-338-P2 Sto-Mir-338-P2 Tgu-Mir-338-P2 Tgu-Mir-338-P2-as Tni-Mir-338-P2a Tni-Mir-338-P2b Xla-Mir-338-P2c Xla-Mir-338-P2d Xtr-Mir-338-P2
Node of Origin (locus)	Amniota
Node of Origin (family)	Vertebrata
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)	CM054698.2: 96593343-96593405 [+] UCSC Ensembl
Precursor (pre-Mir +30nt flank)	GGCAGGUCGGGAGGCUGGCAGCUGCCCUCUUCAACAAAAUCACUGAUGCUGGAGUUGCCUGAGUCAUCACUCAGCACCAGGAUAUUGUUGGAGAGGACGGCCGUGCGGCGUCUGGGGCUGACA Get precursor sequence
Structure	10 20 30 40 50 60 GGCAGGUCGGGAGGCUG--\| A C A A A AGUUGCCU GC GCUG CCUCUUCAACAA AUC CUG UGCUGG G UG CGGC GGAGAGGUUGUU UAG GAC ACGACU A ACAGUCGGGGUCUGCGGCG^ C A A - C CACUACUG 120 110 100 90 80 70
Deep sequencing
Comment	There is a second Dicer cut +1 on the 3p arm.
3' NTU	Unknown
Motifs	CNNC at 3p(+17)
Mature sequence	Pab-Mir-338-P2-as_5p
mirBase accession	None
Sequence	0- UCAACAAAAUCACUGAUGCUGGA -23 Get sequence
Star sequence	Pab-Mir-338-P2-as_3p*
mirBase accession	None
Sequence	41- CAGCACCAGGAUAUUGUUGGAG -63 Get sequence

Pab-Mir-338-P2-as

Pab-Mir-338-P2-as_5p

Pab-Mir-338-P2-as_3p*