MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-338-P1

Family name MIR-338 (all species)
Seed CCAGCAU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-338-P2 
Orthologues Ami-Mir-338-P1  Cli-Mir-338-P1  Cmi-Mir-338-P1  Cpi-Mir-338-P1  Dre-Mir-338-P1  Ebu-Mir-338-o1  Gmo-Mir-338-P1  Lch-Mir-338-P1  Mal-Mir-338-P1  Mun-Mir-338-P1  Sto-Mir-338-P1  Tgu-Mir-338-P1  Tni-Mir-338-P1  Xla-Mir-338-P1a  Xla-Mir-338-P1b  Xtr-Mir-338-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG13: 15505409-15505470 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCCUGCGCCCCCAGCGUAUUCCUCUCUGGAAACAAUAUCCUGAUGCUGAACGAGUGUGUUGGGAAAAGCUCCAGCAUCAGUGAUUUUGUUGCUAGCGGGAGAAUGGAAUCGGCAGAGCAGGA
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Structure
        10         20         30         40        50        60 
UCCUGCGCCCCCAGCGU-    -   U    A     U   -|        AAC    GUGUU 
                  AUUC CUC CUGG AACAA AUC CUGAUGCUG   GAGU     G
                  UAAG GGG GAUC UUGUU UAG GACUACGAC   CUCG     G
AGGACGAGACGGCUAAGG    A   C    G     U   U^        ---    AAAAG 
120       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-338-P1_5p*
mirBase accessionNone
Sequence 
0- AACAAUAUCCUGAUGCUGAACGAGU -25
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Mature sequence

Loc-Mir-338-P1_3p
mirBase accessionNone
Sequence 
39- UCCAGCAUCAGUGAUUUUGUUGC -62
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