MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-338-P1a

Family name MIR-338 (all species)
Seed CCAGCAU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-338-P1b  Xla-Mir-338-P2c  Xla-Mir-338-P2d 
Orthologues Ami-Mir-338-P1  Cli-Mir-338-P1  Cmi-Mir-338-P1  Cpi-Mir-338-P1  Dre-Mir-338-P1  Ebu-Mir-338-o1  Gmo-Mir-338-P1  Lch-Mir-338-P1  Loc-Mir-338-P1  Mal-Mir-338-P1  Mun-Mir-338-P1  Sto-Mir-338-P1  Tgu-Mir-338-P1  Tni-Mir-338-P1  Xtr-Mir-338-P1 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030740.1: 99893009-99893068 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACUGAGAGGCAGUGUGUUUGCUUCCGGCAACAAUAUCCUGAUGCCGUCUGAGUGUGCGGGAUAGCUCCAGCAUCAGUGAUUUUGUUGGUGGUGGUAAAUAAAAGCAUCUUGCACUCUG
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Structure
        10          20        30         40        50        60
CCACUGAGAGGCAGUGU--       U   G      U   -|      CGUCU    GUGC 
                   GUUUGCU CCG CAACAA AUC CUGAUGC     GAGU    G
                   UAAAUGG GGU GUUGUU UAG GACUACG     CUCG    G
GUCUCACGUUCUACGAAAA       U   G      U   U^      AC---    AUAG 
.       110       100        90        80        70
Deep sequencing
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Em
Star sequence

Xla-Mir-338-P1a_5p*
mirBase accessionNone
Sequence 
0- AACAAUAUCCUGAUGCCGUCUGAGU -25
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Mature sequence

Xla-Mir-338-P1a_3p
mirBase accessionNone
Sequence 
37- UCCAGCAUCAGUGAUUUUGUUGG -60
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